Xenorhabdus bovienii SS-2004: XBJ1_0813
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Entry
XBJ1_0813 CDS
T01186
Symbol
ihfB
Name
(GenBank) integration host factor (IHF), beta subunit, site-specific recombination
KO
K05788
integration host factor subunit beta
Organism
xbo
Xenorhabdus bovienii SS-2004
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xbo03032
]
XBJ1_0813 (ihfB)
03036 Chromosome and associated proteins [BR:
xbo03036
]
XBJ1_0813 (ihfB)
03400 DNA repair and recombination proteins [BR:
xbo03400
]
XBJ1_0813 (ihfB)
DNA replication proteins [BR:
xbo03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
XBJ1_0813 (ihfB)
Chromosome and associated proteins [BR:
xbo03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
XBJ1_0813 (ihfB)
DNA repair and recombination proteins [BR:
xbo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
XBJ1_0813 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HAAS
HU-CCDC81_euk_2
MDMPI_C
HU-DNA_bdg
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
CBJ79954
UniProt:
D3UWW9
LinkDB
All DBs
Position
complement(832442..832732)
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AA seq
96 aa
AA seq
DB search
MTKSELIERLTEQQSHMPAKAVEDAVKEMLDHMAETLAAGERIEVRGFGSFSLHYRAPRV
GRNPKTGDKVELEGKYVPHFKPGKELRDRVNIYSDS
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagtctgaattaatcgaaagacttactgagcaacaatctcacatgccagcgaaa
gccgttgaagatgcagtgaaagaaatgcttgatcatatggcagaaacattggccgcaggt
gaacgaattgaagttcgtggattcggcagcttttctcttcactaccgggctccacgtgtg
ggtcgtaaccccaaaactggcgataaagttgaattggaaggtaaatacgttcctcacttt
aaaccaggtaaagagttacgcgatcgcgtgaatatctatagtgacagctaa
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