Xenorhabdus bovienii SS-2004: XBJ1_0969
Help
Entry
XBJ1_0969 CDS
T01186
Symbol
rhlE
Name
(GenBank) putative ATP-dependent RNA helicase with P-loop hydrolase domain
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XBJ1_0969 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbo03019
]
XBJ1_0969 (rhlE)
Enzymes [BR:
xbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XBJ1_0969 (rhlE)
Messenger RNA biogenesis [BR:
xbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XBJ1_0969 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
HI1480
DsrH
Motif
Other DBs
NCBI-ProteinID:
CBJ80110
UniProt:
D3UX65
LinkDB
All DBs
Position
complement(973388..974767)
Genome browser
AA seq
459 aa
AA seq
DB search
MNFESLGLKADILRAVEEQGYVEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPIL
QLLSESPAQAKGRRPVRALILTPTRELAAQVGENVCNYSKYLRLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRVLSKLPAK
RQNLLFSATFSDDIKSLANKLLRDPVSIEVARRNSASEQIDQAVHFVDKKRKGELLSYMI
GNQNWQQVLVFTRTKHGANRLAEQLSQDGVTAAAIHGNKSQGARTRALADFKSGRIRALV
ATDIAARGLDIDQLPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCVDEHKLLHDI
ERLLKREIPRIAISGYDPDPSIKAEPILNGSNSRGSQRGNGRQSPSNQGSSKPNRSNQSR
SNQGSTKQHSDRPRSKGTPSGQRRQRTSSKTSNVAASGK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgagtcactcggcttgaaggctgatattttacgtgccgttgaagaacaaggt
tacgtggaacccacccctattcagcagcaagccatacctgttgtgttgtccggtaaagat
cttttggctagtgcccagacgggaacggggaaaacggcagggtttactttgccaattttg
caattactgagtgaatctccggctcaggcaaaaggtcgtcgtccggtcagggcgctgatt
ttgacaccaacccgtgagctggcggctcaagtgggtgaaaatgtatgcaattacagtaaa
tatctcagattgcgttcattggttgtatttggtggtgtcagcattaatccacaaatgatg
aaattacgtggtggtgtcgatattctcgtggcaactccggggcgtctgttggatttagaa
caccagaatgcggtggacttatcccatgttgaaatccttattttggatgaagccgaccgc
atgttggatatgggctttattcatgacattcgtcgggtattgagcaaattgcctgcaaaa
cgccagaatttactgttttcggcgactttttccgatgatatcaagagccttgccaataaa
ctgctgcgtgatccggtgagcatagaagttgcccgtcgtaactcggcttctgaacaaatt
gatcaagctgttcattttgtggataaaaaacgtaagggagaattgctctcttatatgata
ggcaaccagaactggcagcaggtattggtctttacccgtaccaaacatggcgcaaaccgt
ctggcggaacagctcagtcaagatggtgtcactgctgccgcgattcatggtaataaaagc
cagggagccagaacccgtgcgctggccgatttcaagtcaggccggatacgtgcgctggtg
gcgacagatattgctgcccgtggattggatatcgatcagctgccccacgtcgttaacttt
gaattgcctaatgttgcggaagattacgtgcatcgtattggtcgtacaggccgtgcggaa
gcgacaggacaggcaatatctctggtttgtgtcgatgagcacaaactcctgcacgatatt
gaacgactgctgaagcgtgaaattccacgtattgcgatttcgggttatgaccctgatcct
tccattaaagctgagccaattctgaatggaagtaattcccgtggcagtcagcgtggtaac
ggtaggcaaagcccttctaaccaaggcagcagcaaaccgaaccgctccaaccagagtcgt
tctaaccaaggcagtaccaaacaacacagtgatcgtccgcgcagcaaaggaaccccatcg
ggtcagcgtcggcaacgtacttcatccaaaacatcaaatgtagccgcatcaggaaaataa
DBGET
integrated database retrieval system
