Xenorhabdus bovienii SS-2004: XBJ1_1690
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Entry
XBJ1_1690 CDS
T01186
Symbol
sbcC
Name
(GenBank) ATP-dependent dsDNA exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
xbo
Xenorhabdus bovienii SS-2004
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xbo03400
]
XBJ1_1690 (sbcC)
DNA repair and recombination proteins [BR:
xbo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XBJ1_1690 (sbcC)
Archaeal homologous recombinant proteins
XBJ1_1690 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_29
SMC_N
AAA_23
cobW
ABC_tran
AAA_21
nSTAND_NTPase5
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBJ80816
UniProt:
D3V0Y4
LinkDB
All DBs
Position
1649926..1653606
Genome browser
AA seq
1226 aa
AA seq
DB search
MKILSLRLKNINSLQGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR
LGTISAIQNELITRHTAECLAEVEFEVKGVAYRAFWSQRRARNQADGKLQPPKGELVDKR
TGKILADKIPDKKEKIAEITGLDFKRFTKSILLSQGDFAAFLNADDKDRADLLEELTGTE
IYGILSQEIYQRHKQAQSELNIQQATASSIELLTPEQIENYQNEQQQLTAAETQLSQQIK
AFRSAEQWLIRQNELQQSIAGNTLLLQQAEQAIQNAQPQLQQLTASEPAEKIRSLWDAQN
RAFSEKQRITEQRIKIEHDRQQQLSLLQPAQQQLTDLEKTREEHQQQQIQQEKLISEQVI
PLDHKIDTQSKDLLTLEKEITKQDRELTEISAQYQVAQSRKDTLHNEQKTLETYDDQHPY
CRSLDSKLPEWKQLFSRQKEKQVQIAKLTQKTQQIGTELARITDHLNTLNAELAEQTEQN
QPLHDNLILTEKQLIDLQKIHPLEQLQKQLSDYQEQLKSQNQLEILLPQIQQLQATISTN
QTQLSQSQALLEPLPTQISTLDQQLTEKQQHHEDLADRIRLEQRITSLEQERSQLKEGEA
CPLCGATQHPLVTEYQNIALSQSEERLKSLRHQIDQLQTNRSALQQKQQIQQKNNQQLQQ
NTTQLTEKLTKITQQWKHHCQQLQSAELPMETDPVDNFIGQRQTAYQQYQRQYDALLHAE
KVHQAAEKALSANREQHKASEQAIELEKVKLDSHQKQLAENTAELQQAETEYTTTTELLV
SELQHTPFTLPSLQEVTIWLQQRETELKTYHDSRERWQQLQQEQAALQSQSNELEKQKTK
LTILLHALNEKQQQQKQLLEQITQERHHLFGERSVSTVRQTLQQKTNELDIAYKQATSHL
QQRQNVMNQLTGAVSEIERNSNTAETQCKLTASAFQSGLEQQGFADQSAFEQALLEPEQR
EKLQQLQEQLTQYHLQAKTRHHESETALQRHAETQPQLLEQYEPTQVSVILANISEELKR
NNQQQGEVKTILNSDAMRRQKQQTLLTQISHLQQNYDDWSYLNNLIGSADGAKFRRFAQG
LTLDHLVHLANIRLEKLHGRYDLQRKDDGGLELQIVDTWQADAVRDTKTLSGGESFLVSL
ALALALSDLVSNKTQIESLFLDEGFGTLDPETLDIALDALDHLNASGKTIGVISHVEAMK
ERIPVQIKVEKVNGLGVSRLASEFRV
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcttagcttacggctgaaaaatatcaactctctgcaaggtgaatggaaaatt
gattttacggcagagccttttgccagcaatggattattcgccatcacaggcccaacagga
gcaggaaaaaccaccttactggatgccatctgccttgccctttaccacgaaacaccacgg
ctcggtactatttctgctatccagaatgagttgataactcgtcatactgcggaatgcttg
gcagaagtggaattcgaagtcaaaggcgtagcttatcgtgcattctggagccagcgccgc
gcccgtaaccaagctgatggaaaactccaacctccaaaaggcgaattggtggacaagaga
acgggcaagattttagccgataagatccctgataaaaaagaaaagatcgctgaaataacc
ggtcttgatttcaaacgttttaccaaatccatccttctgtcacagggtgattttgccgca
tttttaaatgcagatgataaagatcgggctgatttactggaagaactgacggggacagaa
atttacggcattctgtctcaggaaatttatcaacgtcataaacaagcccaatctgaactg
aatattcagcaggccaccgcttccagtatcgagttattaacaccggagcaaatagaaaat
taccaaaacgaacagcaacaacttactgcagcagaaactcaactcagccaacagattaag
gcttttcgatctgccgagcagtggcttatccggcaaaatgaattacaacaatcaatagcg
ggcaacacgttgcttttgcagcaggctgaacaggccatacaaaacgcgcaaccgcaatta
caacagcttaccgccagcgaacccgcagaaaaaatccgttcactatgggatgcgcaaaac
cgagcctttagtgaaaaacaacgaattactgaacaacgtataaaaatagaacatgatcgc
cagcaacaactttctttgttacagccagctcaacaacagcttaccgatttggaaaaaaca
cgggaagaacaccagcaacagcaaatccaacaggaaaagctcatctcagagcaggttata
ccactcgatcacaagattgatacgcaatcaaaagatctgcttacgttagaaaaggaaata
accaagcaagatcgtgaactgacagaaatctccgcccaataccaagtagcgcaaagtcgc
aaagatacgctacataatgaacaaaaaacgctggaaacatacgacgatcagcacccttat
tgccgtagtttggacagcaaactccctgagtggaaacaattattttcacgtcagaaagag
aagcaagtgcagatagccaaactgacacaaaaaacacagcagattggcactgaactggct
cgtataaccgatcacttgaatacattgaatgcagagttggccgaacagacagagcaaaac
caaccactgcacgacaatctgatacttaccgaaaagcaactgattgatttgcagaaaatt
catccactggaacaactgcaaaaacagctatcagactatcaggaacaactgaaatcacag
aatcaacttgagatattattgcctcagatccagcaattacaggccacgatctcaactaat
caaactcaattatcacagtctcaggcattactggaacccttgccgactcagatcagtacg
ctagatcaacagctaacggaaaaacagcagcatcatgaagatcttgctgatcgaattcgt
ttggaacagcggatcaccagtctggaacaggagcgttcacagttaaaagaaggtgaagcc
tgcccactgtgtggcgccacacaacaccctttagtcaccgaataccagaacattgccctg
tcacaatcagaagaacgcttaaaatctctacgccatcaaatagatcagctacaaacaaac
cgttctgccctacagcagaaacagcagattcaacagaaaaataatcaacaattacagcaa
aatacgactcaattaaccgagaaactgacaaaaataacacaacagtggaagcatcactgc
caacagttacaatccgctgaattaccaatggaaacagaccctgtcgacaatttcattggc
caacggcaaactgcctatcagcaatatcaaaggcaatacgacgcattattacacgcagag
aaagtacatcaagcggcggaaaaagcgctatcggccaaccgtgaacagcacaaagcatct
gaacaagctattgagctggaaaaggtcaaattagattcacaccaaaaacaactggcagaa
aatacggcagaacttcaacaggcagaaactgaatacacaaccacgacagagctattagtc
agcgaattacagcatacaccttttacccttccctctctgcaagaagtgacaatctggctg
caacaacgcgaaactgagttaaaaacctaccatgattcacgcgaaagatggcaacagtta
cagcaagaacaggctgccctgcaaagtcaatcgaatgaattagagaagcaaaaaactaag
ctgacgatcctccttcacgcccttaacgaaaaacagcagcagcaaaaacagttactggaa
caaataactcaggaacgtcatcatttatttggggaaagatccgttagcaccgttcgtcag
acattacagcaaaagactaatgagctggacatcgcgtacaaacaggctacttcacacctg
caacagcgacaaaacgtgatgaaccaactcactggtgcagttagtgaaattgaaagaaac
agcaataccgccgaaacacaatgcaaacttaccgccagcgctttccaaagcggattggaa
caacagggatttgccgatcaatctgcctttgaacaggccctactggaacctgaacaacgg
gaaaagctgcaacaattgcaagaacaacttacacagtatcatttgcaagccaaaacacgg
caccatgaatcagaaaccgccttacagcgacatgctgaaacacagccccaattacttgaa
caatatgaaccgacgcaagtatccgtgatattagctaacattagtgaagaattgaaacgt
aacaatcaacagcaaggtgaagtcaaaaccatactgaacagtgatgctatgcgtcggcaa
aaacaacaaacacttctgacacaaatttcccacttacaacaaaactatgatgattggagt
tacctcaataacctgattggttccgcagacggtgctaaattccgccggtttgctcaagga
ttaactctggatcatttagtccatctggcgaatattcgactggaaaaattacatgggcgc
tacgatttgcaacgcaaagatgatggagggctggaattgcaaatcgtcgatacctggcaa
gcagatgccgttcgggataccaaaaccctctctggtggcgaaagcttcctcgtcagcctg
gcactcgcactggcgctgtctgatctcgtgagtaacaaaacccagatagaatccctattc
cttgatgaaggctttggcacacttgatccggaaacccttgatatcgctctggatgcattg
gatcacttgaatgcgtcaggaaaaacaataggagtcatcagccatgttgaagcaatgaaa
gaacgcattcctgttcagatcaaagtggaaaaagtgaatggcttgggggtcagtagactg
gcatcagaatttcgggtttaa
DBGET
integrated database retrieval system
