Xenorhabdus bovienii SS-2004: XBJ1_1834
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Entry
XBJ1_1834 CDS
T01186
Symbol
rpoD
Name
(GenBank) sigma D (sigma 70) factor of RNA polymerase
KO
K03086
RNA polymerase primary sigma factor
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XBJ1_1834 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xbo03021
]
XBJ1_1834 (rpoD)
Transcription machinery [BR:
xbo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XBJ1_1834 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HAP1_N
DNA_ligase_A_N
SQS_PSY
D27-like_C
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
CBJ80960
UniProt:
D3V2J5
LinkDB
All DBs
Position
1792771..1794621
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AA seq
616 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTNDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGECRLSDLITGFVDPNAEEDLSPTA
THIGSELPQAELDDSDDDDDEESEDDADSEDDNSIDPELARQKFQELRDQYETTRQSIKS
YGRSHPNTAAEILTLSEVFKQFRLIPKQFDYLVNNMRSMMDRVRLQERQIMKMCVELCKM
PKKNFITLFSGNETTDTWFTAAKAMNKPWSDKLSEVEDDVMRSLQKLRQIEEETGLTIEQ
VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PSPEELAERMLMPEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDTTLELPLDSATS
ESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEVLRSFLDD
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctaaagctacttgtcacccgaggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattctgatcag
atagaagatatcatccaaatgatcaatgacatgggcattcaggtaatggaagaagcacct
gatgctgatgatctcatgttggcagaaaacacaaacgacaccgatgaagatgcggcagaa
gctgctgctcaggtgttatccagtgtcgagtcagaaatcggacgcaccaccgatccggtt
cgtatgtatatgcgtgaaatgggtacggttgagctactgactcgcgaaggtgagattgac
attgcaaaacgcattgaagatggcatcaaccaagtacagtgctctgtcgccgaatatcct
gaagcgatcacatatttgctggagcaatacgaccgcgtagaagcaggcgagtgccgtctg
tctgatttgatcactggcttcgttgatcctaacgcagaagaagatctttcaccgacagct
actcacattggctcagaacttcctcaggcagagcttgatgactctgacgacgatgatgac
gaagaaagtgaagacgatgctgacagcgaagatgataacagcatcgatccagaattggct
cgccaaaagtttcaggaactgcgcgaccaatatgaaacgacccgtcagtcaatcaagagt
tacggtcgcagccatccgaataccgcagcagaaattttaacgctgtccgaagtattcaaa
caattccgtttgataccgaaacagttcgattatctggtcaacaacatgcgttccatgatg
gatcgtgtacgtcttcaagagcgtcaaatcatgaagatgtgtgttgaactgtgcaaaatg
ccgaagaaaaacttcatcacactgttctctggcaatgaaacgactgatacttggttcacc
gcagcaaaagcgatgaacaagccgtggtctgataaattgtcagaagttgaagacgatgtg
atgcgtagtttgcaaaagctgcgccaaattgaagaagaaaccggcctgactattgagcag
gtcaaggatatcaaccgtcgtatgtccatcggtgaagccaaagctcgccgtgcgaagaaa
gagatggttgaggccaatttgcgtctggttatttcgattgcgaaaaaatataccaaccgt
ggcctgcaattcctcgatctgattcaggaaggtaatattggtctgatgaaagcggttgat
aaatttgaatatcgccgtggttacaaattctcaacttacgcaacatggtggatccgtcag
gcaatcacgcgttctatcgctgatcaggctcgtaccatccgtatcccggtacatatgatt
gaaaccatcaacaaactcaatcgtatttcccgtcagatgttgcaggaaatgggtcgagag
ccttcaccggaagagctggcagaacgtatgttgatgccagaagacaagatccgtaaggtg
ctgaaaatcgctaaagagccaatttcaatggaaacaccagtaggtgatgatgatgattca
catctgggggatttcattgaagataccacattggagctgccgctggattctgcaacatca
gaaagcctgcgttctgccacccacgatgtgctggctgggctgactgcgcgtgaagcgaaa
gtgctgcgcatgcgtttcggtatcgatatgaacaccgaccatacactggaagaagtgggt
aaacagtttgacgtaacccgtgagcgtattcgtcagatcgaagcgaaagccctgcggaaa
ctgcgtcacccgagccgttcagaagtactgcgcagcttccttgatgactga
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