Xenorhabdus bovienii SS-2004: XBJ1_2205
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Entry
XBJ1_2205 CDS
T01186
Symbol
kdsA
Name
(GenBank) 3-deoxy-D-manno-octulosonic acid 8-P synthetase
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo00541
Biosynthesis of various nucleotide sugars
xbo01100
Metabolic pathways
xbo01250
Biosynthesis of nucleotide sugars
Module
xbo_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
XBJ1_2205 (kdsA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
xbo01005
]
XBJ1_2205 (kdsA)
Enzymes [BR:
xbo01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
XBJ1_2205 (kdsA)
Lipopolysaccharide biosynthesis proteins [BR:
xbo01005
]
Lipid A
XBJ1_2205 (kdsA)
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Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
MjAgo_N-like
Motif
Other DBs
NCBI-ProteinID:
CBJ81331
UniProt:
D3V158
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Position
2186802..2187656
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AA seq
284 aa
AA seq
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MQQKVVNIGDIKVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDK
ANRSSIRSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPAQAQPVADVVDVIQLPAFLAR
QTDLVEAMAKTGAVINIKKPQFVSPGQMGNIVEKFKEGGNDQVILCDRGSNFGYDNLVVD
MLGFGVMQQATHGAPVIFDVTHALQCRDPLGAASGGRRAQVAELARAGMAVGIAGLFLEA
HPDPENAKCDGPSALPLAKLESFLMQIKAIDDVVKSFPELDTSK
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgcaacagaaagtggttaatattggtgatatcaaggtcgcaaatgatctgccatttgta
ttgtttggtggaatgaacgttcttgaatcacgggatttggccatgcggatttgtgagcac
tatgtcactgtgacacaaaaactgggcattccttatgtttttaaagcgtcttttgataag
gctaaccgttcttctatccgctcttatcgtgggccagggctagaagaagggatgaaaatc
tttcaggaactgaaacaaactttcggcgtgaaaattatcactgacgtgcatgagcctgca
caggctcaaccagtcgcggatgtggtggatgtgattcagcttccagctttcctcgcccgc
cagaccgatctggttgaagcgatggcgaaaaccggtgctgtgatcaatattaaaaaacca
cagtttgttagccctgggcaaatgggcaatattgttgaaaaattcaaagaaggcggcaat
gaccaggtgatcctgtgtgaccgtggcagcaactttggctatgacaatctggtggttgac
atgctgggcttcggtgttatgcaacaggctacccacggtgcaccggttattttcgatgtc
actcatgcattacagtgtcgtgacccattaggtgcagcgtccggtggccgtcgtgcacag
gttgctgaactggctcgtgcgggtatggccgtggggatcgccggtctgttccttgaagcg
catccagatccagaaaatgccaaatgtgatggcccgtctgctttgccattggcaaaactg
gagtcattcctgatgcaaattaaagcgattgatgatgttgtgaaaagttttccggaactg
gataccagcaaataa
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