Xenorhabdus bovienii SS-2004: XBJ1_2289
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Entry
XBJ1_2289 CDS
T01186
Symbol
topA
Name
(GenBank) DNA topoisomerase type I, omega protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xbo03032
]
XBJ1_2289 (topA)
03400 DNA repair and recombination proteins [BR:
xbo03400
]
XBJ1_2289 (topA)
Enzymes [BR:
xbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
XBJ1_2289 (topA)
DNA replication proteins [BR:
xbo03032
]
Prokaryotic type
DNA Topoisomerases
XBJ1_2289 (topA)
DNA repair and recombination proteins [BR:
xbo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XBJ1_2289 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
CK_II_beta
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
CBJ81415
UniProt:
D3V265
LinkDB
All DBs
Position
2259870..2262461
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AA seq
863 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGAASQKSSNSSTDKNKKKKD
EKTALVNRMGVDPYHGWEADYQILPGKEKVVAELKMLAEKADHIYLATDLDREGEAIAWH
LREVIGGGEARFSRVVFNEITKNAITQAFDNPGELNIDRVNAQQARRFMDRVVGYMVSPL
LWKKVARGLSAGRVQSVAVRLIVEREREIKAFVPEEYWQLHADLMAKGDIDLHMEVTHEG
GKPFKPINAQQTQAAVSLLEKARYKVLDREDRPTSSKPGAPFITSTLQQAASTRLGFGVK
KTMMMAQRLYEAGHITYMRTDSTNLSQDALDMVRGYINDQFGDKYLPKTANIYSNKENSQ
EAHEAIRPSSVDVMAEELKDMEADAQKLYQLIWRQFIACQMMPAKYDSTTLTIQAGNFEL
RAKGRTLRFDGWTKVMPALRKGDEDHTLPVVEVGTELDLKQLSPSQHFTKPSARFSEASL
VRELEKRGIGRPSTYASIISTIQDRGYVRGENRRFYAEKMGEIVNDRLEENFNELMSYDF
TARMEDQLDHVANNEANWKGVLDEFFTNFSEQLDVASKDPDEGGMRPNPMVSTSIDCPTC
SRPMGIRTATTGVFLGCSGYTLSPKERCKQTINLIPENEILNILEGDEAETNALRARHRC
KECGTAMDSYLIDNQRKLHVCGNNPACDGYEVEEGEFRIKGYDGPIVECDKCGSEMHLKM
GRFGKYMGCTSEECKNTRKILRSGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLA
ASTFPKSRETRAPLVEELVKFKDRLPEKLCYLAKAPVADPEGHKTVVRFSRKTKQQYVSS
EKNGKATGWAAFFVDGAWVVKEK
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgttatagtggagtccccggcaaaagccaaaacaatcaataaatat
ctggggaatgactacgttgtaaaatccagtgtaggtcatatccgtgatttgccgaccagt
ggagcagcgagtcaaaagagttcgaactcatcaactgataagaataaaaagaaaaaggat
gagaagacagcgctggttaaccgaatgggagttgatccctatcacggttgggaagcggat
taccaaattttgcctggtaaggaaaaagttgtcgcagaactgaaaatgcttgctgaaaaa
gccgatcatatctatctcgcgacggatcttgaccgtgaaggggaagccattgcatggcac
ctacgagaggttattggtggaggagaggctcgtttcagtcgggttgtatttaatgagatc
accaaaaatgctatcactcaggctttcgacaatcctggtgaactgaatatcgaccgtgta
aatgcacagcaggcgcgccgttttatggatcgcgtcgtgggttatatggtttcacctctg
ttgtggaagaaagtcgccagagggctgtctgccgggcgcgttcaatccgtggcggttcgc
cttatcgttgagcgggaacgtgaaatcaaggcctttgtgccagaagaatactggcaatta
cacgcggacttaatggctaaaggagacattgatcttcatatggaagtcacccatgaaggg
ggaaaaccattcaagcccattaacgcacagcaaacacaggctgcggtatccttgcttgaa
aaagccagatacaaagttcttgatcgtgaagaccgcccgacgtccagtaaaccgggcgcg
ccattcattacttcaacactgcaacaggctgccagtacgcggcttgggttcggtgtcaag
aaaacgatgatgatggcacagcggttatatgaagcaggacacatcacgtacatgcgcaca
gactcgactaatttgagtcaggatgcactggacatggttcgtggttatatcaatgatcaa
tttggtgacaaatatttgccaaaaacggccaatatctatagcaataaggaaaattcgcag
gaggctcatgaagctatccggccttccagtgtagatgtcatggcggaagaactaaaagat
atggaagccgatgcacaaaaactgtatcagcttatctggcgccagttcattgcctgtcaa
atgatgccagcgaaatacgattccactacgctgacaattcaggcggggaattttgaactc
cgtgccaaaggtcgtacattgcgttttgatggttggactaaagtgatgccagcattgcgc
aagggggatgaagatcatactttaccagtggttgaagttggcactgaacttgatttgaaa
cagttgagcccaagccagcatttcacgaaaccatcggcacgtttcagtgaagcatctcta
gtcagagagttggaaaagcgtggcattggtcgcccatcaacctatgcatcaattatttca
actattcaggatcgtggttatgtgcggggtgaaaaccgtcgattttatgcggaaaaaatg
ggtgaaatcgttaatgatcgtttagaagagaacttcaacgaattaatgagctatgatttt
accgcaagaatggaagaccagctcgatcacgtcgccaataacgaagctaattggaaaggg
gtactggacgagttttttaccaatttcagtgaacagcttgatgttgctagcaaagatcct
gatgaaggcggtatgcgtccgaatccaatggtgagcacttctattgattgtccgacgtgt
agtcgcccaatgggtattcgcacagcgacaacgggggtatttcttggctgctctggctat
acgctatcaccgaaagaacgttgcaagcaaaccatcaatttaatcccggaaaacgaaatt
ctgaacattcttgaaggggatgaggcggaaactaatgcattgcgtgcccgccatcgctgt
aaagaatgtggtacagcgatggatagctatcttattgataaccaacgtaagttacatgtt
tgtggtaataacccagcatgtgatggttatgaagtggaagaaggcgaattccgaatcaaa
ggttatgatggcccaatcgttgagtgtgataaatgtggttcagaaatgcacttaaaaatg
gggcgtttcggtaaatacatgggatgtacaagcgaagagtgcaaaaacacccgtaagatc
ctccggagcggagaagtcgccccaccgaaagaagatccagttccattgcctgaactgcca
tgtgaaaaatcggatgcctattttgttctgcgcgatggtgctgccggcgtatttcttgca
gctagtacgttccccaaatcgcgagaaacccgagcaccgctggttgaggaacttgtcaag
ttcaaggatcgcttgccagagaagctatgctatctggccaaggctcctgttgctgaccct
gaagggcataaaacagtagtacgttttagccgtaagacgaagcagcaatatgtatcttcg
gagaaaaacggtaaggcgaccgggtgggcagcattttttgttgatggtgcttgggtagta
aaagaaaagtaa
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