Xenorhabdus bovienii SS-2004: XBJ1_2302
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Entry
XBJ1_2302 CDS
T01186
Symbol
rnb
Name
(GenBank) RNase II, mRNA degradation
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xbo03016
]
XBJ1_2302 (rnb)
Enzymes [BR:
xbo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
XBJ1_2302 (rnb)
Transfer RNA biogenesis [BR:
xbo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
XBJ1_2302 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
CBJ81428
UniProt:
D3V184
LinkDB
All DBs
Position
complement(2273195..2275135)
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AA seq
646 aa
AA seq
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MFQNNPLLAQLKQQLYSQTLRVEGLVKGTEKGFGFLEVDGQKSYFIPPPQMKKVMHGDRI
TAAIHTDKEKEIAEPEALIEPFLTRFVGRVQKKENDNRLWIIPDHPLLKDTILCRPANQV
THNFENGDWAVAEMRRHPLKGDRGFQAEITGYIIKGDDHYAPWWVTLTRHSLQREAPTMP
DCQLDDGSLERIDLTALDFVTIDSATTEDMDDALHIVKNNDGSLKLSIAIADPTAYIKAD
SELDKIAYQRSFTNYLPGFNIPMLPRELSDDLCSLRPKARRPALVCQVSILEDGQLGDDM
QFFAAWVESKFKLAYDDVSDWLEHQTGWKPESEAVTTQITLLQEMCERRNQWRHQYALVF
KERPDYRFVLDKGGNVVDIVIDQRRSANRIVEEAMITANLCAAKILRDKLGFGIYNVHTG
FEPTQIDQVVDVLKENGIEAEANALLELDGFCQLRRELDQQPTQFLDSRIRRFQTFAEIR
PEPGPHFGLGFDAYATWTSPIRKYSDIINHRLLKAIIQQTEEEKPSEEVCLQLTERRRAN
RMAERDVGDWLYARFLHPHAGTDKTFSAEIVDITRGGLRIRLVDNGAIAFVPGSFLHAVR
DELQCSQETGSVLIKGEAVHRLNDIINVRIEEVRMETRNIVARPVA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaacaatccgctgcttgcacagctaaaacagcaactctactctcagacccta
cgcgtagaaggtttagttaaaggaactgaaaaaggctttggatttttggaagtcgatggc
cagaaaagctatttcattccaccaccacagatgaagaaagtgatgcatggcgatcgtatt
accgctgccattcacaccgataaagagaaagaaatcgctgaaccagaagccttgattgag
ccatttctaacccgttttgtaggaagagtccaaaagaaagagaacgacaaccgactgtgg
attattccggatcatccattattaaaagatacaatcctttgtcgtcctgctaatcaagtc
acccataattttgagaatggcgattgggcagtggctgaaatgcgccgtcatccactgaaa
ggagatcgggggtttcaggctgaaatcactggttatattatcaaaggtgatgatcactat
gcaccttggtgggtaactctgacacgccatagtctgcaacgtgaagctccaacaatgccc
gattgtcagttggatgatggttcgctggagcgtatcgatctgaccgctctcgattttgtc
accatcgacagtgcgacaaccgaggacatggacgatgcactgcatatcgtcaaaaataat
gatggcagcctgaaattgtccatcgccattgccgatccaactgcctatatcaaggctgac
agtgaattagacaaaattgcctatcagcgcagctttactaactatctgccaggcttcaat
attcctatgctgcctcgcgaactttctgatgatttatgttcgctgcggccaaaagctcgc
cgtcctgcactggtttgccaggtttccattctggaagatggacaattaggcgacgacatg
caatttttcgctgcatgggtagaatcgaaatttaaactggcttacgatgatgtttctgac
tggctggaacaccaaaccggctggaaaccagaatcagaagcagtcactacccaaatcact
ctattacaagagatgtgcgaacgtcgcaatcaatggcgtcatcaatatgccttggttttc
aaagagcgtccagattatcgctttgtccttgataaaggtggcaatgttgttgatatcgtt
attgatcaacgccgttctgccaaccgtattgttgaagaagcgatgattactgcgaaccta
tgtgcagccaagatcctgcgtgacaaattaggttttggcatttataacgttcatactggc
ttcgaaccaacacaaattgatcaagttgtggacgttttaaaggaaaatggtattgaagct
gaagcaaatgcactgctagaactggatggtttctgccagttacgccgtgaattagatcaa
caaccgactcaattcctcgatagccgtatccgtcgcttccaaacgtttgcagaaatcaga
cccgaaccaggtccacactttggattgggttttgatgcctatgcaacttggacatctcct
atccgtaaatacagcgatattattaaccatcgtttgttaaaagccatcattcagcaaacc
gaagaagaaaaaccatccgaagaggtctgtctgcaactgacagagcgtcggcgtgcaaac
cgcatggcagaacgcgatgtaggcgactggctctatgcgcgttttctacatcctcatgct
ggcacagataaaactttctctgctgagattgtggatattacccgtggtggcctgcgcatc
cgtctggttgacaatggtgctatcgcttttgttccaggatcattcctgcatgctgtgcgt
gatgagcttcaatgcagtcaagagacaggttccgttcttattaagggtgaagccgttcat
cgtttgaatgacattattaatgtacgcattgaagaagtcagaatggaaacccgtaatatt
gtggcacgccctgttgcctga
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