Xenorhabdus bovienii SS-2004: XBJ1_2398
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Entry
XBJ1_2398 CDS
T01186
Symbol
rnd
Name
(GenBank) RNase D, processes tRNA precursor
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xbo03016
]
XBJ1_2398 (rnd)
Enzymes [BR:
xbo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
XBJ1_2398 (rnd)
Transfer RNA biogenesis [BR:
xbo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
XBJ1_2398 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
CBJ81524
UniProt:
D3V1I0
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All DBs
Position
complement(2371650..2372807)
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AA seq
385 aa
AA seq
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MYLNNILSSGYNYQLITSDAQLQSICERAKKHATIALDTEFVRTRTYYPQLGLIQLFDGE
QLSLIDPLDISEWQPFRELLTDRDVLKFIHAGSEDLEVFWNSFQCLPTPMIDTQVLAAFI
GHPMSCGFATLVAQYLHVELDKSESRTDWLARPLSEKQCEYAAADVYYLLPLADILMAAT
EQAGYMGAAQDESYLIAQRRKEILMPECAYKDIGNAWQLRPKQLACLKKLAGWRLNQARE
RDLAINFVIREENLWQVARYMPTSLGELDALGLSGQEIRCHGRRLLAMVAESRDIPDEAC
PALITNLIDYPGYRTAFKEIKSLVTQISESHQFSVELLASRRQINQLLSSHWKLKSPDYQ
PELLRGWRGELLAEPVAEILANYPA
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaaataatattttgtcttctggttataattatcagttgattacttccgatgct
caattgcagtcaatctgtgagcgggcaaaaaaacacgcaacaattgcattagatacagaa
tttgtacgcacacggacgtattatcctcaattaggtttgatacaactgtttgatggagaa
caactttctctgattgatcctctcgatatttcagaatggcaaccctttcgggagttgttg
actgatcgagatgtattaaaattcatccatgctggtagtgaagatttagaggttttttgg
aatagctttcaatgtttgccaacgccgatgattgatactcaggtactggctgcgtttatt
ggtcaccctatgtcatgtggttttgcaacactggttgctcaatatctgcacgtagaattg
gacaaaagtgagtcccgcactgattggttggctcgtccattgagtgaaaagcagtgtgaa
tacgccgcggcggatgtttattatttattgcctttggccgatattctgatggcggcaacg
gagcaggcgggatacatgggtgcggcacaagatgaaagttatctgattgcccaacgccgc
aaagaaatcttaatgccagaatgtgcttacaaagatataggtaacgcgtggcaattacgt
ccaaagcagctggcctgtttgaaaaaactggcgggatggcggttaaatcaggcgcgtgag
cgggatttggcaatcaattttgttattcgcgaagaaaacctatggcaggtagcccgttat
atgccgacttctttgggggagctggatgccttaggattaagtgggcaggaaatccgttgt
catgggcgtcgtttgctggcaatggttgcagagagcagagatattccagatgaagcctgt
ccggctctcattacaaacctgattgattatccgggctatcgtacggccttcaaggaaatt
aaatcgctggttactcaaataagtgagtcccatcagtttagtgtggaattattggcttcc
cgccggcagatcaatcaattgctcagttctcattggaaactgaagtcacccgattatcag
cctgaattactccgtgggtggcgaggagagttgctggctgagcctgttgctgaaatatta
gcaaactatccggcttaa
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