Xenorhabdus bovienii SS-2004: XBJ1_2506
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Entry
XBJ1_2506 CDS
T01186
Symbol
ycfS
Name
(GenBank) putative enzyme with LysM domain
KO
K19236
L,D-transpeptidase YcfS
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01503 Cationic antimicrobial peptide (CAMP) resistance
XBJ1_2506 (ycfS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xbo01002
]
XBJ1_2506 (ycfS)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xbo01011
]
XBJ1_2506 (ycfS)
Peptidases and inhibitors [BR:
xbo01002
]
Cysteine peptidases
Family C82
XBJ1_2506 (ycfS)
Peptidoglycan biosynthesis and degradation proteins [BR:
xbo01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
XBJ1_2506 (ycfS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldt_C
YkuD
LysM
Motif
Other DBs
NCBI-ProteinID:
CBJ81630
UniProt:
D3V1T6
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All DBs
Position
complement(2478162..2479232)
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AA seq
356 aa
AA seq
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MKRFLTFIGISLIGMLLLSSVVNIANAMEYPLPPNNSRLIGENAIYIVSDDGLSLEAIAA
KYQIGLLAMLEANPGVDPYLPKLGAKLIIPSQMLLPDTLRQGIIINLAEFRLYYFPKGKN
YVVVYPIGIGQLERDTPTMTTSVSQLIKNPTWTPTTNIRKDYASRGIILPTVVPAGADNP
MGDFALRLAAGRGEYLIHGTNANFGIGMRVSSGCIRLRPDDIENLFYSVPRGTRVQVINE
PIKYTVEPTGKRYVEIHQPLSDKQADDPQTRPIQRTKGLIKFIDNRETDAVLVDQAIIRR
SGIPVRVNKGIALSNQEEQEVSRPIETHEEAIHSVSPVKLPPLNQPSPIYQTEPLS
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgatttttgacttttatcggtatctctttgatcggtatgttattgttaagtagt
gtagtcaatatagccaatgcgatggagtatccattgccaccaaataacagtcgcctgatt
ggtgagaacgccatctatattgtatctgatgatgggctttcgctggaagccattgccgcc
aaataccaaataggtttgctggccatgctggaggctaatcctggcgttgatccttatctg
ccgaaactaggcgctaagctgattattccatcacagatgctgcttcccgatactcttcgt
caaggtattatcattaatctggcagaatttaggctctattatttccccaaagggaaaaac
tatgttgtcgtctatcccattgggatcggtcagcttgaacgtgatacaccgacgatgaca
acgtctgtcagccaattgattaaaaatccaacatggacaccaactaccaatattcggaaa
gattatgcgagccgagggattattttgccaacggtagtacctgccggagcggataatccg
atgggggattttgccttgcgtttggctgctggccgtggagaatatttgattcatggtacg
aatgcaaattttggtattggcatgcgtgtcagttcgggctgtattcgtttgcgtcccgat
gatattgaaaatttgttttatagcgttccacgaggaacccgtgttcaggtaattaatgaa
ccaatcaaatatacagtggagccaacggggaaacgttacgtggaaattcatcagccactt
tcagataaacaggccgatgaccctcagactaggccgattcagcgcacaaaagggttgata
aaatttattgataatcgtgaaacagacgctgttcttgttgatcaggcgatcattcgacgt
tcaggaatacctgtgcgggtaaataaaggtattgctttatctaatcaggaagagcaagaa
gtttcaaggccgattgagactcacgaagaagccattcacagtgttagcccagttaaatta
ccgccattaaatcagcctagtcccatttatcagactgaacccttatcctga
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