Xenorhabdus bovienii SS-2004: XBJ1_2843
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Entry
XBJ1_2843 CDS
T01186
Symbol
mfd
Name
(GenBank) transcription-repair ATP-dependent coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XBJ1_2843 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xbo03400
]
XBJ1_2843 (mfd)
Enzymes [BR:
xbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XBJ1_2843 (mfd)
DNA repair and recombination proteins [BR:
xbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XBJ1_2843 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CBJ81967
UniProt:
D3V805
LinkDB
All DBs
Position
2792936..2796376
Genome browser
AA seq
1146 aa
AA seq
DB search
MSAKYRYQLPERRGDIRQLGHLTGAACAVECAEIIERHSGPVLLVTQDMQNALRLRDEIL
QFTHAPINMLSDWETLPYDSFSPHQEIISNRLSTLYHLPFMTKGALILPVNTLMQRVCPH
EYLKRHALVMFKGQRLSRDKLRTELEQSGYRSVEQVLEHGEFATRGALFDMFPMGSEHPY
RIDFFDDEIDSLRTFDIDSQRTLVEVETINLLPAHEFPTDQEAIELFRSQWREQFEVRRD
AEHIYQQVSKKMLPAGIEYWQPLFFEQPLPAIFNYLPENTLLITQDLVSAAERFWQDTAQ
RFESRKIDPMRPLLSPEQIWLPVDKLFAELKNWPRIQVKNEALPQKAGNTNLAYQALPDL
SVTAQHKTPLDKVRRFIEQFNGRIIFSVESEGRRETVQGLLSRIKISPIKIKQLIDANKS
GCFLMVGAAEHGFIDEDNKLALICESDMLGERVSRRRQDSRRTINTDILIRNLAELRRGQ
PVVHLEHGVGRYQGLMMLEAGGIQAEYLILTYAGEDKLYVPVSSLHLISRYAGGAEDSAP
LHKLGGEAWNKARQKAAEKVRDVAAELLDVYAQRAIKPGFACTQDPEQYQLFCQSFPFDT
TPDQEQAINAVLDDMCQPVAMDRLVCGDVGFGKTEVAMRAAFMAITNNKQVAVLVPTTLL
AQQHYDNFRDRFANWPVHLEVLSRFRSAKEQQQVIDMAAEGKVDIIIGTHKLLQNDLCWK
DIGLLIVDEEHRFGVRHKERIKAIRADVDVLTLTATPIPRTLNMAMSGMRDLSIIATPPA
RRLAVKTFVREYDSLVVRESILREILRGGQVYYLYNDVENIEKAKNRLEELVPEARIVVG
HGQMRERDLERVMADFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPNPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
DQSGQMASVGFTLYMELLESAIDALKNGREPSLEDLTSSQTEIELRMPVFLPDDYIPDVN
MRLSFYKRIASAHNDAELAELKVELIDRFGLLPDPGRQLLQSASIRLTAQSLGIKRIEAH
EKGGFIEFSDNNKVDPNYLIGLLQTQPNIYRLDGPSKLKFITDLTERSTRLSFIQQLLEA
FVQHQI
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcaaaataccgttatcaacttcctgaacgtcgcggtgatatccgccagttgggt
catttgactggtgccgcctgtgcagtcgaatgtgccgaaattattgaacgtcactcaggt
ccagtgctactggtgacacaagatatgcagaatgctttgcgattgcgtgatgaaattctg
caattcacccacgcaccaataaatatgctgtcagattgggaaacattaccttacgatagt
ttttcaccccatcaagaaatcatctcaaatcgcttatccacgctttatcacttaccgttc
atgacgaaaggtgcactgatcctacccgtcaatacgttgatgcagcgtgtttgtccacat
gaatatctcaagagacatgccttggttatgttcaaaggtcagcgcctttcacgggataaa
ctgcggacagaactggaacagtccggttatcgtagtgttgagcaagtacttgaacacggt
gaatttgctacacgcggcgccttgtttgatatgttcccgatgggaagtgaacatccttac
cgtattgatttttttgatgatgaaatcgatagcctgcgtactttcgatatagatagccag
cgaacactggttgaagtggaaacaatcaatttattgccagctcatgaattcccgactgat
caagaggcgattgaattattccgcagccaatggcgtgagcagtttgaagttcgccgcgat
gctgagcatatctaccagcaggtcagcaagaaaatgctgccggctggcattgagtactgg
caacccctgttctttgaacagcccctgcctgcgatttttaattatctacccgaaaatacc
ctgctcattacacaggatttagtcagtgcagcagagcgtttttggcaggatacagcacaa
cgctttgaaagccgaaaaattgatccaatgcggccattactatctcctgagcagatttgg
ctacctgtcgataaattattcgctgaattaaaaaattggccccgcattcaggttaaaaat
gaagcactccctcaaaaggcaggaaacaccaaccttgcttatcaggctctccctgattta
tcggttactgcacagcacaaaacacctttggataaggtgcgccgttttatcgaacagttc
aatggcaggatcattttctcggtagaaagtgaggggcgccgggaaaccgtacaagggctg
ttgtcacgtataaaaattagcccgataaaaataaaacagttaatagatgccaataaatct
ggctgcttcttaatggtaggagcggcagagcatggtttcattgatgaagataataaactc
gcacttatctgcgaaagtgacatgctcggtgagcgcgtaagccggcgccggcaagatagc
cgacgtaccatcaatactgatattttgatccgcaaccttgctgaactgcgtcgcggtcag
cccgttgttcaccttgaacatggtgttggccgttatcaggggttgatgatgctggaggcg
ggtggcattcaggcagagtatctgatcctgacctatgccggagaagacaaactgtatgtg
ccagtctcctctctgcatctcatcagtcgttatgctggcggtgctgaagatagcgcacca
ctgcacaaattaggtggagaggcatggaataaagcccgtcaaaaagcggctgaaaaagta
cgtgatgtcgcagctgagttactggatgtgtatgcgcagcgtgccattaaaccgggcttt
gcctgcacacaggatcccgagcaataccaactgttttgtcaaagttttccgtttgatacg
acaccggatcaagaacaagcgatcaatgcggtactggatgatatgtgccaacccgttgcc
atggatcggttagtgtgtggtgatgttggatttgggaaaaccgaagtcgcgatgcgcgcc
gcttttatggccatcactaataacaaacaggtagccgttctcgtgccgacaaccctgttg
gcacagcagcattatgataatttccgggatcgctttgcaaactggcctgtgcatcttgaa
gtactgtcacgctttcgcagtgcaaaagaacaacagcaggttattgatatggccgctgaa
ggcaaagtcgatatcatcatcggtacccataaacttctacaaaatgatctgtgctggaaa
gatattggtttattgattgtcgatgaagaacaccgttttggggttcgccacaaagaacgt
atcaaagccattcgtgctgatgtcgacgtcctgactctaaccgcgacgcccattccccgc
acgcttaatatggcaatgagtggtatgcgtgatctgtcgatcatcgccacgccacctgcc
cggcgtctggcggtcaaaacctttgtacgtgagtatgacagtttagtcgttcgtgaatcc
atcctgcgggagattttgcgtggtggtcaggtttattacctctataatgatgtcgaaaat
attgagaaggccaaaaatcggctggaagaattagttcctgaagccagaatcgtcgtcggc
catggacagatgcgtgaacgtgatctggaacgggtcatggcagatttccatcaccaacgt
tttaatgtactggtatgtaccaccattattgaaaccggaattgatatccccagtgccaat
acgattatcattgaacgcgctgatcactttggattggctcagttacaccagttacgcggg
cgtgtcgggcgttcccatcatcaggcatatgcttatctgctgactccaaatccaaaagcc
atgactaccgacgcccaaaagcgcctggaggccattgcatcccttgaggacttaggcgca
gggtttgcactcgccactcatgatctggagatcaggggggctggtgaattgttaggtgaa
gaccaaagtggtcagatggccagcgtcggttttacactctacatggaactgctggaaagt
gccattgatgcactgaaaaacggacgtgaaccatcacttgaagatctcaccagcagccag
accgagattgaactgcgtatgccggtatttttgcctgatgattatatccctgacgtgaat
atgcgcctgtctttctataagcgcattgccagcgcccacaatgatgctgaactagctgaa
ctgaaagttgaattgattgaccgatttggtttactgcctgatccgggtcgccagttattg
caatctgcctcaattcgtctgaccgcgcagagtttgggtatcaagcgcattgaagcgcat
gagaaaggtggctttatcgagtttagtgataacaataaagtcgacccaaattatctgatc
ggtttattgcagacacagcctaacatttatcggctggatggcccctcgaaactgaaattt
attactgatttaaccgagagatctacacgtttgtctttcatccagcaattattagaagcc
ttcgttcagcatcagatataa
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