Xenorhabdus bovienii SS-2004: XBJ1_2851
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Entry
XBJ1_2851 CDS
T01186
Symbol
holB
Name
(GenBank) DNA polymerase III, delta prime subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo03030
DNA replication
xbo03430
Mismatch repair
xbo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XBJ1_2851 (holB)
03430 Mismatch repair
XBJ1_2851 (holB)
03440 Homologous recombination
XBJ1_2851 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xbo03032
]
XBJ1_2851 (holB)
03400 DNA repair and recombination proteins [BR:
xbo03400
]
XBJ1_2851 (holB)
Enzymes [BR:
xbo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XBJ1_2851 (holB)
DNA replication proteins [BR:
xbo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XBJ1_2851 (holB)
DNA repair and recombination proteins [BR:
xbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XBJ1_2851 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
Caps_syn_GfcC_N
Motif
Other DBs
NCBI-ProteinID:
CBJ81975
UniProt:
D3V813
LinkDB
All DBs
Position
complement(2802746..2803744)
Genome browser
AA seq
332 aa
AA seq
DB search
MNWYPWLNHAYRLLIESHQQERGHHALLLHAHEGTGAGALLYGLSRWLMCQDKQGMKSCG
KCHGCHLMLAETHSDWHALAPEKGKSTIGVDAVRQLNERLYEYSQQGGAKIVWLPSAESL
TDAASNALLKTLEEPPQNTYFLLQCQRPARLLATLRSRCFYYFLPVPEQRVGLYWLQHQL
PAISSLDAQTALKLSQGAPLAAEQLLQTEKWQQRNVFCQAIEQALHNCDTLSLLPLLNRD
DAQQSLYWLVSLLSDAVKWQQQAQDYCVNQDQQALIHHLASTQSVGKLLSTVDDWVHCRH
QLLSVVGVNRELLLTGQLLNWEKQLCSTRKLI
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgaactggtatccgtggcttaaccatgcatatcgcctgttgattgaatcccatcaacag
gagcgtggacaccatgcccttttgcttcatgctcatgaaggaacgggtgcaggtgcgtta
ttgtatggattgagccgctggttgatgtgtcaggacaaacaaggaatgaaaagttgtggc
aagtgtcacggttgtcatctgatgctggcagaaacgcattctgactggcatgctcttgcc
cctgaaaagggaaaaagtactattggagttgatgctgtgcgtcagctcaacgaaaggctt
tacgaatattctcaacaaggtggagctaaaattgtctggctaccttctgccgagtctctg
accgatgctgcttccaacgctttgctgaaaacattggaagaaccccctcaaaatacctat
ttcctgttgcagtgccagcgtccagctcgcttgctggcaacgctgcgcagtcgctgtttt
tactattttctacctgtgcctgaacagcgtgtagggctttactggctgcaacatcaactc
cctgcaatatcatctctggatgcgcagacggcgttaaaactttcacaaggtgcgcctctt
gctgctgaacagttgcttcagactgaaaaatggcagcagagaaatgtgttttgtcaggca
attgaacaggcattgcataactgtgataccctgtcacttttacccttattgaatcgtgat
gatgcacagcaatctttgtattggctggttagcctgttatccgatgcggtgaaatggcag
cagcaggcgcaggattactgcgtcaaccaagatcagcaggctttgatccatcatctggct
tccactcaaagtgtgggaaaattattaagtacagttgatgattgggtacattgtcgtcat
caattactctctgtggtgggcgtcaatcgggaattattgttgacaggacaattactcaat
tgggaaaagcagctttgttccacacggaaactcatttag
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