Xenorhabdus bovienii SS-2004: XBJ1_3700
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Entry
XBJ1_3700 CDS
T01186
Symbol
recD
Name
(GenBank) exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XBJ1_3700 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xbo03400
]
XBJ1_3700 (recD)
Enzymes [BR:
xbo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XBJ1_3700 (recD)
DNA repair and recombination proteins [BR:
xbo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XBJ1_3700 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
NAT10_TcmA_helicase
AAA_11
SH3_13
UvrD-helicase
SLFN-g3_helicase
AAA_22
AAA_16
nSTAND3
CbiA
PhoH
DEAD
UvrD_C
SRP54
AAA_28
AAA
NPHP3_N
ResIII
DO-GTPase1
Flagellin_IN
ABC_tran
Flavi_DEAD
MukB
NTPase_1
AAA_14
DUF87
Motif
Other DBs
NCBI-ProteinID:
CBJ82818
UniProt:
D3V589
LinkDB
All DBs
Position
3603551..3605458
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AA seq
635 aa
AA seq
DB search
MSDMKLLLQQAVAQKLLRPLDVQFAYAMIENGDPLLLLITALVSAESGAGHVCLPLERIS
PEYLFEGRQPELAASLWFSAGKPNQQQVISALQACSAVSTGESPAPIILSRHALADYRLY
MQRMWQSERRVAEFFASVELSDDIDEVQLHRILDELFGVTAEGEIDWQKVAAAVAVTSRI
SVISGGPGTGKTTTVAKLLAALIKLNEGRTLSIQLAAPTGKAAARLTESLSEAVNKLALT
SQQSNSIPEQAQTIHRLLGAQPDSQKLRYHRDNPLSLDILIIDEASMVDLPMMARLIEAL
PPRAKVIFLGDKDQLASVEAGAVLGDICRFAEQGYSAKRAEQLSQLTGCQLTSYSMPDSG
EHTLAVRDCLCLLRKSYRFNSASGIGQLASAVNQGNSAGVSAVLGQSLPDVHFNPLAGDE
DYQRLLMQTAEGYYRYLAMVNEQASDKDILAEFNRFRLLCALREGPFGVSGLNQRVEQLL
HRKGVISLPRSAESGGYAGRPIMILRNDSTLGLFNGDIGIMLRNKDNELKAHFQLSDGTI
KPFQPSRLPQHETAYVMTVHKSQGSEFEHTALVLPTQFSPVVSRELVYTALTRAREKLTL
YAHKPVLDKAVSTSTQRRSGLAEWLKPKGECQSGQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacatgaaattattgttgcagcaagccgttgcccaaaaattactgcgcccgctg
gatgtgcagtttgcttatgcaatgattgaaaacggagatcctctgttattgctgattacg
gcattggtgagtgcggaatcaggagcagggcatgtctgcctgccattagagcggatctcg
cctgaatatttatttgaggggcggcagcctgaattagcagcatcgctctggttttcggcg
gggaaaccaaatcagcagcaagttatttcagcgttacaagcatgttctgcagtgagcact
ggcgaatctcccgcaccgatcattctttcccgccacgctcttgctgattatcgcctttac
atgcaacgcatgtggcaaagtgagcgtcgggtcgcggagttttttgcgtcggtagaatta
tctgacgatattgatgaagtgcaattacatcgcattttggatgaactttttggtgtcacc
gctgaaggggaaatagactggcagaaagtggcggcggcagttgctgtaaccagccgtatt
tccgttatctctggcgggccagggacaggaaaaacgacgacggtagctaagttgctggcc
gccttgatcaaactgaatgaaggcagaacactgagtattcaattggccgcacccactggt
aaagcggccgccagattgactgaatcgctgagtgaggcagtcaataaactggctttaaca
tcacaacaatcgaatagcattcctgagcaggcacaaacaattcatcgcctgttgggagcg
cagccagatagccagaaactgcgttatcaccgcgataatccgctatctcttgatattttg
atcatcgatgaagcctcaatggtggacttaccgatgatggcacgtttgatagaagccctg
ccaccacgggcaaaagtgatttttctgggggataaagatcagttggcctcggttgaagcg
ggagccgtattgggggacatctgccgcttcgctgaacaaggttatagtgccaagcgtgcc
gaacaattgagtcagttgacaggctgtcagctaacatcgtattcaatgcctgattctgga
gaacatacactggcagtccgggattgcttatgtctgttacgtaaaagctatcgtttcaac
tcggcttcgggtatcgggcaattagcatcggcggttaatcaaggcaatagtgccggggta
tctgccgtcttgggtcagtctttgcctgatgttcacttcaatcctcttgcaggagatgaa
gattatcagcgtttattgatgcaaactgcagaaggttattaccgttatttagcgatggtg
aacgaacaagcatctgacaaagacattttggcagagtttaaccgtttcaggttgttgtgt
gctttgagggaagggccgtttggtgtaagcggcttgaaccagcgggtagagcaattgtta
catcgtaaaggcgttatttctctgcccagaagtgcggagagcgggggttatgccggacgt
cccattatgatcttacgcaacgatagtacactggggctatttaatggtgacattggtatt
atgctcaggaataaggataatgagctgaaagcccattttcagctatctgatgggacgata
aagccatttcagccgagccgattgcctcagcatgaaacggcctatgtgatgactgtccat
aaatcccaaggttctgagtttgaacacaccgcgttagtcttgccgactcaattctcgcca
gttgtcagccgggaactggtgtacacagccttaacccgtgcccgtgaaaaattgacgctt
tacgcacataaaccggttctggataaggcggtgagtacatcaacacagcggcgtagtggc
ttggcagaatggctcaagccaaagggagagtgtcaatcaggtcagtaa
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