Xenorhabdus bovienii SS-2004: XBJ1_4053
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Entry
XBJ1_4053 CDS
T01186
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XBJ1_4053 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xbo03021
]
XBJ1_4053 (rpoC)
03400 DNA repair and recombination proteins [BR:
xbo03400
]
XBJ1_4053 (rpoC)
Enzymes [BR:
xbo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XBJ1_4053 (rpoC)
Transcription machinery [BR:
xbo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XBJ1_4053 (rpoC)
DNA repair and recombination proteins [BR:
xbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XBJ1_4053 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CBJ83165
UniProt:
D3V686
LinkDB
All DBs
Position
complement(3902496..3906722)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERAQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNLDLENECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEVRDGEGNVTTNTGLVDTTVGRAILWMIVPRGLPYSLINQALGKKA
ISKMLNTCYRILGLKPTVILADQTMYTGFAYAARSGVSVGIDDMVIPEKKEGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEAVINRDGEEEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMATPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKWCDLLEESSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGHLKL
FNAKYVTNSAGKLVITSRNTELRLIDDFGRTKESYKVPYGSVLSKGDGETVTGGETVANW
DPHIMPVVSEVSGIIQFYDMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAQGKDVLISGTDMPAQYFLPGKAIVQLEDGMSISAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVAERGDVISDGPESPHDILRLRGVHAVARYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKVTIANAGSSEFLEGEQVEYARVKVANRKLELDGKLAATFHRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQERIRRRHANEVVE
APPVSVDEATANLAELLNAGFGSSSDKE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctctccagatatgatccgttcgtggtcattcggggaagtaaaaaag
ccggaaaccattaactaccgtacgttcaagcctgaacgtgacggtcttttctgcgcacgt
atcttcgggccagtaaaagattacgaatgcttgtgtggtaaatacaagcgtttgaaacac
cgtggtgtgatttgtgagaagtgtggcgtcgaagtgacccagactaaagttcgtcgtgac
cgtatgggtcatatcgagctggcatctccaaccgctcatatctggttcctgaaatctttg
ccatcccgcatcggtttgctgctggatatgccactgcgcgatattgaacgcgtactgtac
ttcgaatcctatgtggttgttgaaggcggcatgaccagccttgagcgtgcacagatcctg
acagaagaacagtatctggatgcattggaagagttcggtgatgaatttgatgcaaaaatg
ggcgcagaagcgatccaggctttgctgaaaaaccttgatctggaaaacgaatgtgaaacc
ttgcgtgaagagttgaacgaaactaactctgaaactaaacgcaagaagctgaccaagcgt
attaaactgttggaagcattcattcagtctggcaacaagccagagtggatggttctgacc
gttctgccagttttgccaccggatttgcgtccattggttccactggatggcggccgtttt
gcaacttcagacttgaacgatttgtatcgtcgcgttattaaccgtaataaccgtctgaaa
cgcctgctggatctggctgcgccagacatcatcgtgcgtaacgaaaaacgtatgttgcag
gaagcggttgatgcgctgctggataacggccgtcgcggtcgtgcgatcaccggctctaac
aagcgtcctctgaaatccttggcagacatgatcaagggtaaacaaggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactcaggccgttctgtaattaccgtagggccatac
ctgcgtctgcatcagtgtggtcttcctaagaagatggcattggagctgttcaagccattc
atctacggcaagctggaactgcgtggtctggcgacgactatcaaagccgccaagaaaatg
gttgagcgtgaagaagcggtcgtatgggatatccttgatgaagtgatccgtgagcaccca
gttctgctgaaccgtgcaccgacccttcaccgtttgggtatccaggcattcgagccagtt
ctgatcgaaggtaaggcaatccagttgcacccactggtgtgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacactggaagcccagttagaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccagcgagcggtgagccaatcatc
gttccctctcaggacgttgtattgggtctgtactacatgactcgtgactgtgttaacgcc
aaaggcgaaggcatggttttgaccggtcctaaagaagctgaacgcgtttatcgcgccggt
ctggcttctctgcacgcccgtgtcaaagttcgtatcactgaagaagtgagagatggtgaa
ggcaatgtcaccaccaatacgggtctggtggataccaccgtcggtcgtgccatcctgtgg
atgattgtaccgcgtggtctgccttactcgctgattaaccaggcgttgggcaaaaaagct
atctccaagatgctgaacacctgttaccgcattctgggcctgaaaccaaccgttatctta
gctgaccagaccatgtataccggttttgcttacgctgcccgttcaggggtatccgtaggt
attgatgacatggttattcctgagaagaaagaaggcatcattgcagaagcggaagcggaa
gtggccgaaattcaggaacagttccagtcaggtctggtaactgcgggcgaacgctataac
aaagttatcgatatctgggctgcggcaaacgaacgtgttgccaaggcgatgatggaaaac
ctgtctactgaagctgttattaaccgtgatggcgaagaagaacagcaagtttctttcaat
agcatctttatgatggctgactccggtgctcgtggttctgccgctcagatccgtcagctg
gcgggtatgcgtggcctgatggcaacaccagatggttccatcatcgaaaccccaatcacc
gcgaacttccgtgaaggtttgaacgtactccagtacttcatctcaacccatggtgctcgt
aaaggtttggcggataccgcattgaaaacggcgaactccggttacctgactcgtcgtctg
gttgacgttgctcaagacttggtcgtgactgaagatgactgtggtactcacaacggtatc
ttgatgactccggttatcgaaggtggtgatgttaaagaaccactgcgtgagcgtgtactg
ggtcgtgtgacggctgaagacgtcctaaaaccaggtacagcggatattttggttccacgt
aacactctactgaatgaaaaatggtgtgatctgttagaagaaagctccgttgacagcgtg
aaagtacgctccgtagtaagctgtgagacagacttcggcgtctgtgcaaactgttacggc
cgtgaccttgcccgtggtcatatcatcaacaaaggtgaagcagttggtgttatcgcggca
cagtcaatcggtgaaccaggtacacagttgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatccagcattcaggtacgtaacaaaggtcatctgaagctg
ttcaacgcgaaatacgtcactaactcagcaggcaaactggttattacttctcgtaataca
gaactgcgtctgattgatgatttcggccgtaccaaagaaagctacaaagtcccttacggc
tcggtattgtcgaaaggtgatggcgagacagtgactggcggcgaaaccgttgcgaactgg
gatccacacatcatgccagtcgtgagtgaagtgtccggtatcatccagttctatgacatg
gttgatggccagaccattactcgtcagacggacgaattgaccggtctgtcatcactggtg
gttctggacagtgcagaacgtacaggtagcggtaaagacctgcgtccggcactgaaaatc
gttgacgctcagggtaaagatgttctgatctcaggtactgatatgcctgctcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcatgtctatctctgcgggtgatacg
ctggcgcgtattcctcaggaatctggcggtactaaagatatcaccggtggtctgccacgc
gttgcggatctgttcgaagcacgtcgtccgaaagagcctgcgatcctggcagaaatcagc
ggtattgtttccttcggtaaagaaaccaaaggtaaacgtcgtctggtaatcagcccattg
gatggtagtgatgcttacgaagagatgatccctaaatggcgtcagctcaacgtattcgaa
ggtgaagttgctgaacgtggtgacgtgatctccgatggcccagaatctccacacgatatt
ctgcgtctgcgtggcgttcacgcggttgcccgctacatcaccaacgaagtacaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagtgactatcgcgaatgcgggtagttctgagttcctcgaaggcgagcaggtt
gaatacgcgcgtgttaaagtcgcgaaccgtaagctggaactggatggcaaattagcggct
accttccatcgtgacctgttgggtatcaccaaggcatcactggcaacagaatccttcatc
tctgcggcgtcgttccaggaaacaacgcgcgtactgactgaagcagctgttgcaggtaaa
cgtgatgaattgcgtggcctgaaagagaacgtcattgttggtcgtctgatccctgcgggt
acaggttatgcgtaccatcaggagcgcatccgccgtcgtcacgcaaacgaagtggttgaa
gcgccaccagtcagtgttgatgaagcgactgcaaaccttgctgaattgttgaatgcaggt
ttcggtagcagcagcgataaagagtag
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integrated database retrieval system
