Xenorhabdus bovienii SS-2004: XBJ1_4184
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Entry
XBJ1_4184 CDS
T01186
Symbol
rhlB
Name
(GenBank) putative ATP-dependent helicase with nucleoside triP hydrolase domain
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XBJ1_4184 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbo03019
]
XBJ1_4184 (rhlB)
Enzymes [BR:
xbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XBJ1_4184 (rhlB)
Messenger RNA biogenesis [BR:
xbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XBJ1_4184 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CBJ83296
UniProt:
D3V6L7
LinkDB
All DBs
Position
4018843..4020126
Genome browser
AA seq
427 aa
AA seq
DB search
MSKTHLTEKKFSDFALHPKVIEALDKKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKT
LAFLTSTFHYLLTHPAAADHKTNQPRALIMAPTRELAVQIYSDAEELAEATGLKMGLAYG
GDGYDKQLKVLESGVDIVIGTTGRLIDYTKQGYVNLNAVQVVVLDEADRMYDLGFIKDIR
WLFRRMPVAAQRMNLLFSATLSYRVRELAFEQMNSPEYVEVEPLQKTGHRIQEELFYPSN
EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILE
EFSLGNLDILVATDVAARGLHIPFVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYALNLTSIEEYIQHQIPVSKYNSDALLMDLPVPKRRNRARSGGHPRRTNMSRRGNPT
RNRKHPG
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttgacagaaaagaagttttccgacttcgcattgcaccccaaggtc
attgaagcccttgataaaaagggcttttccaactgcacgccaatacaggcgctaactttg
ccttttactgtcgaaggccgagatgttgcggggcaggcacaaaccggaacgggcaagacg
ctggcatttctgacgtctacttttcattatttactgacccatcctgctgcggcagatcac
aaaaccaatcagccaagggcgctgattatggcccccacccgcgaattagccgtccagatt
tactctgacgcggaggagttggcagaagccacgggactgaaaatggggcttgcctacggt
ggcgacggctatgataagcagcttaaggttctggaatctggcgtcgatatcgtgattggc
acaacaggtcgtttaatcgattacaccaaacaaggatatgtcaatcttaatgctgttcag
gttgtggtactggatgaagccgatcgcatgtacgatttgggctttatcaaagatatccgc
tggctgttccgccggatgcctgttgccgctcagcgaatgaatctgctgttttccgctacc
ctgtcttatcgagtgcgtgaactcgcctttgaacagatgaatagtcctgaatatgtggaa
gtggaacccttacagaaaacggggcatcgcattcaggaagagctgttttatccttccaat
gaagaaaagatgcgtctgttacagaccctgctggaagaagagtggccagatcgctgcatc
atttttgccaataccaaacaccgctgcgaagatatctgggcccatctggctgccgatggg
catcgtgttggtctgctgacgggtgatgttgcgcagaaaaaacgtctgcgtattttggaa
gaattcagtctgggaaatctggatattctggtcgccactgatgttgctgcccgcggtctg
catattccttttgtaacccatgtatttaactatgatctgccggacgactgtgaagattac
gtccaccgcattggccgtacgggtcgcgcaggagaaagcgggcattcaatcagtctggca
tgtgaagaatacgctctgaatttaacgtcgatcgaagagtatatccagcatcagatccct
gtaagcaaatataacagtgatgcactgctgatggatttacctgtacccaagcgccgtaac
cgcgctcgttcaggagggcacccacggcgcaccaatatgtcgcgccgtggaaatccgact
cgcaaccgtaaacatccaggctga
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