Xenorhabdus bovienii SS-2004: XBJ1_4217
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Entry
XBJ1_4217 CDS
T01186
Symbol
rpoA
Name
(GenBank) RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XBJ1_4217 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xbo03021
]
XBJ1_4217 (rpoA)
03400 DNA repair and recombination proteins [BR:
xbo03400
]
XBJ1_4217 (rpoA)
Enzymes [BR:
xbo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XBJ1_4217 (rpoA)
Transcription machinery [BR:
xbo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XBJ1_4217 (rpoA)
DNA repair and recombination proteins [BR:
xbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XBJ1_4217 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
CBJ83325
UniProt:
D3V6P6
LinkDB
All DBs
Position
complement(4054027..4055016)
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVKVQGKDEVILTLNKSGIGPVTAADIIHDGD
VEIVKPQHVICHLTDGSASISMRIKVQRGRGYVPASARIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaagtcagt
tcgacgcacgccaaggtgacccttgagccattagagcgtggctttggccatactcttggc
aacgcactgcgccgtattctgctttcgtctatgccgggttgtgcggtgactgaggttgag
attgatggtgtactgcatgagtacagcaccaaagaaggcgtacaggaagatatcctggag
attctcctcaatctgaaagggctagcggtgaaagttcagggtaaagatgaagttatcctt
accttgaataaatctggcattggccctgtgactgcagccgacatcatccatgatggtgat
gttgaaatcgtcaagccgcagcacgtaatctgccatctgactgacggaagtgcttccatt
agcatgcgtattaaagttcagcgcggtcgtggttatgtgccggcttctgcccgaattcat
tcggaagaagatgagcgccctatcggtcgtttgttagtagatgcttgctatagcccagta
gagcgtattgcctacaatgttgaagcagctcgtgtagaacagcgtactgacttggataag
ctggttatcgaaatggagactaacggcacaatcgatcctgaagaggcgattcgccgtgca
gctaccattctggccgaacaactggaagcttttgttgatttacgtgatgtacgtcaacca
gaagttaaagaagagaagccagagtttgatccgatcctgctgcgccctgttgacgatctg
gaattgactgtccgctctgctaactgccttaaggcagaagctatccactacatcggtgat
ctggtacagcgtaccgaggttgagttacttaagacacctaatctgggtaaaaaatctctt
actgagattaaagacgtactggcttcgcgtggactttctctgggcatgcgtctggaaaac
tggccaccagcaagtattgctgatgaataa
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