Xenorhabdus budapestensis: HGO23_01345
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Entry
HGO23_01345 CDS
T07176
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
xbu
Xenorhabdus budapestensis
Pathway
xbu03030
DNA replication
xbu03410
Base excision repair
xbu03420
Nucleotide excision repair
xbu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HGO23_01345 (polA)
03410 Base excision repair
HGO23_01345 (polA)
03420 Nucleotide excision repair
HGO23_01345 (polA)
03440 Homologous recombination
HGO23_01345 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xbu03032
]
HGO23_01345 (polA)
03400 DNA repair and recombination proteins [BR:
xbu03400
]
HGO23_01345 (polA)
Enzymes [BR:
xbu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HGO23_01345 (polA)
DNA replication proteins [BR:
xbu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HGO23_01345 (polA)
DNA repair and recombination proteins [BR:
xbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HGO23_01345 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HGO23_01345 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Prok-E2_E
HHH_5
DUF2529
Motif
Other DBs
NCBI-ProteinID:
QTL41582
LinkDB
All DBs
Position
328990..331812
Genome browser
AA seq
940 aa
AA seq
DB search
MVQIADNPLILVDGSSYLYRAYHAFPPLTNSTGEPTGAMYGVLNMLRSLILQYKPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIEPLHKMVKAMGLPILVVPGVEADDVIGT
LALQAEKEGRSVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVIEKYGIPPELIIDFL
ALMGDSSDNIPGVPGVGEKTALGLLQGIGGLSEIYARLDEIVTLSFRGAKTLGGKMEQHK
EVAYLSHQLATIKTDVELDKTCLDLTVSAPDNDELLALFGHYEFKRWLSDVQNGSWLESR
PSEKSGQKPTSSTTNKSTAASTPAVANISPESYQTILDQKSLDEWIGKLKQAPAFSFDTE
TDGLDTLTANLIGMSFAVAVIKSSEGEPNVAAAYLPLGHDYLDAPQQLDLHEVLTALKPL
LEDANLPKVGQNLKFDRGVLERHGVALNGIVFDTMLESYVLNSVVGRHDMDSLAERHLGY
KTTTFEEIAGKGKKQLTFNQIPLEEAAKYAAEDADITLRLHQAMYPQIENVPTLKKVFQD
IEMPLVPVLSRMERTGVLIDANTLAEHSKEITARLLELEKAAYELAGEEFNLASPKQLQV
ILFEKMNLPVLKKTPNGAPSTNEEVLEELAEDHELPRIILEHRGLAKLKSTYTDKLPLMV
SPLTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQ
IELRIMAHLSQDKGLLDAFAQGKDIHRATAAEVFGVPLDQVTSEQRRSAKAINFGLIYGM
SSFGLSRQLGIPRGEAQRYMDLYFERYPGVLEYMECTRQQAAEHGFVETLEGRRLYLPDI
KSRNAIRRKASEREAINAPMQGTAADIIKLAMIAVDDWIVTAQPNVRMIMQVHDELVFEV
HESELAIAEQKIRELMEKSMQLGVPLKVDVGVGENWDQAH
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggtacagatagcagacaatcccctgattttggttgatggttcttcatacctttatcgt
gcataccatgctttccctcctctgacaaacagcacaggcgaaccgacaggcgccatgtat
ggtgtgctgaatatgctgcgcagtttaatcctgcaatataaacccagccatgtggcggtt
gtatttgacgctaaaggcaagacgttccgtgatgaattatttgctgaatataaatctcat
cgtccaccgatgccggatgatttacgtgagcagattgagccgctgcataagatggtcaag
gcaatgggactgccaattttggttgtgccgggggttgaagcagatgacgtcattggtact
ttggcgttgcaggcagaaaaagagggacgttcagttctgattagcacaggcgataaagac
atggctcagttggtgacacctaatatcactctgatcaacaccatgactaacaccattttg
gggccggatgaagtcattgaaaaatatggtattcctccggaattaattatcgattttctt
gcattgatgggggattcttccgataacattcctggtgtgccgggagttggcgagaaaacg
gcgctaggactattacagggcattggtgggttgagtgagatctacgccagacttgatgag
attgtgacactcagtttccgtggtgcaaaaacgctgggtggaaaaatggagcagcataaa
gaggttgcttacctttctcatcagttggcgaccattaaaaccgatgttgagctggataaa
acctgtctggatcttacggtttccgcacctgataacgatgaattattggcgctgttcggt
cactatgaatttaaacgctggttgagcgatgtacaaaatggcagttggttagaaagccgt
ccgtcggagaaaagcgggcaaaagccaacgagcagcacgacgaataaatccacagcagcc
agcacacctgccgtagctaatatttctcccgaaagctaccagactatccttgatcagaag
tctcttgatgaatggattgggaaattaaagcaggcaccagcattttcgttcgatactgaa
acagatgggcttgatactttaactgccaatctgattggaatgtcttttgctgttgcagtg
atcaaatcttcagagggtgaacctaatgttgcagccgcttatctgccgttgggacacgat
tacctggacgcgccacaacagttggatctgcacgaagtgcttacagcactgaaaccgctg
ttggaagatgccaacctgcctaaggttggtcagaacctaaaatttgatcgcggtgtactg
gaacgccacggtgtggcattgaatggtatcgtttttgatacgatgctggaatcgtatgtc
ctgaacagtgttgtagggcggcatgatatggacagtcttgccgagcgtcatttgggatat
aaaaccacgacttttgaagaaattgcgggcaaaggtaaaaaacagcttactttcaaccag
atcccattggaagaagcggcaaaatatgctgcggaagatgcagatatcactctgcggttg
catcaggctatgtatccacagatagagaatgtgccgacactgaaaaaagtttttcaggac
atcgaaatgccgttggttcctgtactttctcgcatggaacggacaggtgttttgatcgat
gctaacacgttggcagaacattcgaaggagattacggctcgtttgctcgaactggaaaaa
gccgcttatgagttggctggagaagagttcaatcttgcttcacctaaacaattgcaggtc
atcttgtttgaaaagatgaatctgcctgttttgaaaaaaacgccgaatggtgcaccatcc
acgaatgaagaagtgttggaagagctggcggaagatcacgagttaccgagaattattttg
gaacaccgtggcctggcaaaactgaaatccacttataccgataaattgccgctgatggtc
agcccgctgactcagcgtgttcacacttcttatcatcaggcggtgaccgcaaccggacgt
ctctcttcccgtgatcctaacctgcaaaatattcctgttcgtaatgaagaagggcgacgt
attcgccaggcatttattgcaccagagggctatcgcatcatggctgcggactattcgcag
attgagttgcggattatggcgcatttatctcaggataaaggattattggatgcttttgca
caaggcaaagacattcaccgtgctacggccgcggaagtctttggtgtgccactggatcaa
gttaccagcgaacagcgccgcagcgcgaaagcgattaactttggtctgatttatggcatg
agttcgtttggtttgtcccgccaattgggtattccgcgtggggaagcccagcgctatatg
gatctctattttgagcgttatccgggtgtactggaatatatggagtgcactcgtcaacag
gctgctgaacacggatttgttgagacgctggaaggtcgtcgtctgtatctgccagatatt
aaatcgcgcaatgccatacgtcgtaaggcttctgagcgtgaggccattaatgccccgatg
cagggaacagcggcagatattattaaattggctatgatagcggtggatgattggatcgtc
actgcacaaccgaatgtgcgtatgattatgcaggttcatgatgaattggtgtttgaagta
catgaatcagagctggctatcgcggaacagaaaatcagggagttgatggagaaaagtatg
cagcttggtgtccctctgaaagttgatgtgggggtaggagaaaattgggatcaggctcac
taa
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