Xenorhabdus budapestensis: HGO23_04840
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Entry
HGO23_04840 CDS
T07176
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
xbu
Xenorhabdus budapestensis
Pathway
xbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGO23_04840 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbu03019
]
HGO23_04840 (pcnB)
Enzymes [BR:
xbu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
HGO23_04840 (pcnB)
Messenger RNA biogenesis [BR:
xbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HGO23_04840 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QTL40702
LinkDB
All DBs
Position
complement(1061135..1062493)
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AA seq
452 aa
AA seq
DB search
MKKTSGKAKPSAPLITVIPREQHPISRKDISENALKVLYRLNKSGFEAYLVGGGVRDLLL
HKKPKDFDIATNATPEQVRKLFRNCRLVGRRFRLAHIMFGPDVIEVATFRGSHEQTECND
RNQSHKAQSGMLLRDNIFGSVEEDAARRDFTINSLYYGIEDFALRDYVGGMADLEEGIIR
LIGDPETRYREDPVRMLRAVRFASKLNMTIEETTAEPILHLAFLLKEIPPARLFDESLKL
LQAGHGHSTYKLLREYQLFEPLFPLIQRGFTQRGDSAMEKLLEQVLKNTDYRLQNDKRVN
PAFLFAAILWYPLIEHAEKLTQEGGLQYYDAFALAMNDILDEQCRSIAIPKRHTTTMRDI
WLLQLRLPRRQGKRANKLMEHPKFRAAFDLLELRASIEPRHELKELVHWWIEFQQSTPSQ
QRGMISELGSEPVRRRTRQHRGGINRPRYNRN
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaacatctggaaaggcaaaaccttctgcccccctaatcaccgtgatcccacgg
gaacagcaccctatttcacgcaaagatatcagtgaaaatgcattgaaggttctataccgc
ctgaataaatctggttttgaggcttatttggtaggcggcggtgtacgtgacttattactg
cacaaaaaaccgaaagatttcgatattgccaccaacgcaacaccagagcaagtacgtaag
ttattccgtaactgccgccttgttggtcgccgttttcgccttgcccacattatgtttggg
ccagatgtgattgaagttgccacattccgtgggtcacatgaacaaactgaatgcaatgac
cgcaatcagtcacacaaagcgcaaagtggaatgttactgcgtgacaatatctttggttca
gtggaagaagacgccgctcgccgcgatttcactatcaatagcctctattacggtattgaa
gatttcgcactgcgggattatgtcggtggaatggccgatctggaagaaggtatcattcgc
ctgattggtgatccggaaacccgctatcgcgaagatccggtacggatgctgcgtgccgtc
cgtttcgccagcaagctaaacatgactatcgaagagaccactgccgaacctatcctacat
cttgcatttctgttgaaagagatcccaccagcccgtctatttgatgaatctctgaaacta
ctacaggcaggacacggtcacagtacttataagctactgcgtgaataccagctatttgaa
ccattattcccgctaatccaacgtggattcacccaacgcggtgactcagcaatggaaaaa
ttgttggagcaggtattaaaaaataccgattatcgcctccagaatgacaaacgggtcaat
cctgctttcttatttgcggcaatattatggtatccactgattgaacatgcggaaaaactg
acgcaggaagggggattacagtattacgatgcctttgctctggcgatgaatgatattctt
gatgaacagtgccgttcaattgccattccaaaacgccataccacaactatgcgtgatatt
tggctattgcagcttcgcctaccgcgccgtcaggggaaacgagcaaataaattgatggag
catccaaaattccgtgctgcttttgatttattggaattacgcgccagcattgaaccacgt
catgaactgaaagaactggtgcactggtggatagaattccaacaatcgacaccttcacaa
cagcggggcatgatctctgagcttggcagtgagcctgttcgtcgcagaacgcgccagcac
cgtggtggtattaatcgtcctcgctataacaggaattaa
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