Xenorhabdus budapestensis: HGO23_05985
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Entry
HGO23_05985 CDS
T07176
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
xbu
Xenorhabdus budapestensis
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xbu03009
]
HGO23_05985 (srmB)
Enzymes [BR:
xbu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HGO23_05985 (srmB)
Ribosome biogenesis [BR:
xbu03009
]
Prokaryotic type
rRNA helicases
HGO23_05985 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTL41636
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All DBs
Position
complement(1300474..1301814)
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AA seq
446 aa
AA seq
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MTATNFSEFELDECLLDALNDKGYEIPTAIQVAAIPAAMDGRDVLGSAPTGTGKTAAYLL
PTLQHLLDFPRKKSGPPRILILTPTRELAMQVAEQAKELAAHTNLDVATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDVETIAGETRW
RKQTLLFSATLEGEAIRDFAKRLLTDPIEIDAEPSRRERKKIQQFYYRADNLEHKIALLC
HLLKQSDVTKSIVFVRKRERVRELVDWLHQAGIQSCFLEGEMVQAKRTEAVKRLNDGRVK
VLVATDVASRGLDIENISHVFNFDLPRTADVYLHRIGRTARAGRKGTAIALIESHDHLLL
GKISRYLNEPLKMRVVDELRPQTKAPSEKKSHKPSKKVLEKRKEKKKAEEAKKKQGKVRH
RDSKNIGKRRAPSGNPRPESTESTQD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgacaaacttttccgaattcgaacttgatgaatgcctgcttgatgcgttgaat
gataaaggctatgaaattccgacagcaattcaggtagctgctattcctgcggctatggat
gggcgtgatgtactaggctctgcgccgacaggtacaggcaaaacagcggcctatctgctg
ccaactctacaacatttactggactttccacgtaaaaagtcagggccaccacgtattttg
atcctaacaccaacccgtgaattagccatgcaggttgcagaacaggctaaagagctggct
gcccacactaatttggatgttgccactattactggtggtgttgcctatatgaaccatgca
gaagtgttcagtgagaatcaggacatcgttgtcgcaaccactggacgcctgctgcaatat
atcaaagaagagaactttgactgccgtgcggtagaaaccctaattcttgatgaagcggat
cgcatgctggatatgggatttgccaatgatgttgaaactattgccggagaaacgcgctgg
cgcaaacaaacactgttattctccgcaacacttgaaggtgaagctattcgtgattttgcg
aaacgcctgctgacagatcctatcgaaattgacgcagaaccttcccgccgtgaacgtaag
aaaatccagcaattctattatcgtgctgataatctggaacataaaatagccttattatgt
catctcctgaaacaatctgatgttacaaagtcgattgtctttgtacgcaaacgggagcgt
gttcgcgaattagtggattggctgcatcaggcaggtattcagtcctgcttccttgaaggt
gaaatggtacaggccaaacgaaccgaagcagtaaaacgtctgaatgatggcagagtcaag
gtgttggtcgcaactgacgttgcttcccgtggattagatattgaaaacatcagtcacgtt
tttaactttgacctgccgcgtactgctgatgtttacctgcaccggattggccgtacagcc
cgcgcaggtcgtaaaggaaccgcaattgcgctgattgagtctcatgatcatttattgctt
ggaaaaatcagtcgctatctcaacgagcctctgaaaatgcgggttgtagatgaacttcgt
ccgcaaaccaaagcaccgagtgaaaagaaaagccataagccatccaaaaaagtgctggaa
aaacgtaaagaaaagaaaaaagcagaagaagcgaagaaaaaacaggggaaagtacgccat
cgtgacagcaaaaacatcggaaaacgccgcgctccttcaggtaaccccagaccagaatcg
acagaatctactcaagattaa
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