Xenorhabdus budapestensis: HGO23_08275
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Entry
HGO23_08275 CDS
T07176
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
xbu
Xenorhabdus budapestensis
Pathway
xbu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HGO23_08275 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xbu03400
]
HGO23_08275 (sbcB)
Enzymes [BR:
xbu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
HGO23_08275 (sbcB)
DNA repair and recombination proteins [BR:
xbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HGO23_08275 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HGO23_08275 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HGO23_08275 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QTL41286
LinkDB
All DBs
Position
complement(1816973..1818400)
Genome browser
AA seq
475 aa
AA seq
DB search
MNNDKTPTFYFHDYETFGKHPALDRPAQFAGVRTDSDFNIIEEPLVVYCAPADDYLPDPE
AIMITGITPQLALKKGVNEAEFARLIHTAFSKPNTCILGYNNIRFDDEVSRNIFYRNFYD
PYAYSWQKGNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHTQAHD
AMSDVYATIAMAKLIKQAQPKLFDYFFQLRNKQKISNQIDIPQMKPLVHVSGMFGTLRSN
ISLIAPLAWHPTNRNAVIMCDLAGDITPLLELNADELRERLYTRRDELQSEQTPVPIKLV
HINKCPIIAPENTLRSQDAERVGLDRNQCAQNLAILHSNPQIREKVVELFSHPEEFPESD
NVDAKIYSGFFSDADKTAMEIIRGTIPQNLPALDLTFQDTRIKALLFRYRARNYSATLDY
DEQQRWLQHRREILTQENITQYFATIEQLFIEHQSDEEKCRQLKALIDYAVQLAE
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgaataacgataaaacccccactttctactttcatgactatgagaccttcggtaaacat
cctgccttagatcgtcctgcacagtttgcgggagttcgtactgacagtgattttaatatc
attgaagagccgttagtggtgtactgtgcccctgctgatgattacctccctgatcctgaa
gctatcatgattacgggaattactccccaattagcactgaagaaaggggttaatgaagca
gaatttgcacgcctgatccatactgcattcagtaaacccaatacctgtattctcggatat
aacaatatccgttttgacgatgaagtcagccgtaatatcttttatcgcaatttctacgat
ccttatgcttatagttggcaaaaaggtaattctcgttgggacttgcttgatgtgttacgt
gcctgctatgccctgcgcccagaagggatcatctggccagaaaatgatgatggtctaccc
agctttaaactggaacatctgacaaaagccaatggcgttgaacatactcaagcccatgac
gccatgtcagatgtttacgccactattgctatggcgaagctgattaaacaagcacaacct
aagctgttcgattattttttccagttaagaaataaacaaaaaatcagcaatcaaattgat
attccacaaatgaaaccgctggtacatgtatcaggcatgtttggcactttacgtagtaat
attagcctgattgcacctttggcctggcatccaacaaaccgtaatgccgttatcatgtgt
gatttggcaggtgatatcacacctttgctggagcttaatgcggatgaattacgtgaacgc
ctgtatacccgacgagatgaattacaatcagagcaaacgcctgttcccatcaaactggtg
catatcaataaatgcccgattattgcgcctgaaaatacattgcgctcccaagatgcagaa
cgggttggattagatcgcaaccaatgtgcacaaaatctggctatcttacatagcaatcca
caaatcagggaaaaagtggtcgaattgttttctcatccagaggaatttccagaatccgat
aatgttgatgctaagatatatagtggctttttcagtgacgctgataaaactgcgatggaa
attattcgtggaaccattcctcaaaatctgcctgcgttggatttaacgtttcaagataca
cgcattaaagcacttctgttccgttaccgcgccagaaactattcggcaactttggattat
gatgaacagcagcgttggttgcagcatcgccgggagatactgacacaagaaaatatcacc
caatattttgcaactattgaacaactttttattgaacaccaatctgatgaagagaaatgc
cgtcaattaaaggcattgatagattatgcagttcagctagctgaataa
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