Xenorhabdus budapestensis: HGO23_08415
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Entry
HGO23_08415 CDS
T07176
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xbu
Xenorhabdus budapestensis
Pathway
xbu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HGO23_08415 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xbu03400
]
HGO23_08415 (mfd)
Enzymes [BR:
xbu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HGO23_08415 (mfd)
DNA repair and recombination proteins [BR:
xbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HGO23_08415 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QTL41312
LinkDB
All DBs
Position
complement(1845776..1849216)
Genome browser
AA seq
1146 aa
AA seq
DB search
MSAKYRYQLPERRGDIRQLGHLIGAACAIECAEIIERHPGPVLLVTKDMQNALRLRDEIP
QFTHAPINMLSDWETLPYDSFSPHQEIISTRLSTLYQLPFMMKGVLILPVNTLMQRVCPH
EYLRGHALIMSKGQRLSRDKLRADLEQAGYRSVDQVLEHGEFATRGALFDLFPMGSEHPY
RIDFFDDEIDSLRTFDVDSQRTLAEVEKISLLPAHEFPTDKEAIELFRSQWREQFEVRRD
AEHIYQQVSKKTLPAGIEYWQPLFFEQPLSTLFDYLPENTLLITQDLIATAERFWQDTEQ
RFESRKVDPMRPLLPPERIWLPVDKLFAELKNWPRLQIRNEELPQKAGSINLTYQPLPDV
SVAAHQKAPLDKVRRFIEQFSGKIIFSVESEGRRESVTELLSRIKIHPIKIQQLTDAKEP
DCFLMIGAAEQGFIDEEKKLALICESDMLGERVSRRRQDNRRTINTDTLIRNLAELRHGQ
PVVHLEHGVGRYQGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGAEENAP
LHKLGGDAWNKARQKAAEKVRDVAAKLLDVYARRAIKPGFAFKHDREQYQLFCQSFPFDT
TPDQEQTINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFTAINNNKQVAVLVPTTLL
AQQHYDNFRDRFANWPVHIEVMSRFRSAKEQQQVIDMAAEGKVDIIIGTHKLLQNDLRWK
DLGLLVVDEEHRFGVRHKERIKAIRANVDVLTMTATPIPRTLNMAMSGMRDLSIIATPPA
RRLAVKTFVREYDSLVVRESILREILRGGQVYYLYNDVENIEKAKNRLEELVPEARVVVG
HGQMRERDLERVMADFHHQRFNVLICTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
DQSGQMASIGFTLYMELLESAVDALKNGREPSLEDLTTNQTEVELRMPVLLPDDYIPDVN
MRLSFYKRIASAQNDDELAELKVELIDRFGTLPDPGRQLLQSASIRLTAQELGIRRIESH
EKGGFIEFSQNNKVDPNYLIGLLQTQPNIYRLDGPSKLKFMTDLTERATRSSFIQTLLET
FEQHQI
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcaaaatatcgttatcaacttcctgaacgtcgcggtgatatccgccaattaggc
cacctgatcggcgctgcttgcgccatcgaatgcgccgagatcattgaacgtcacccaggg
cctgttctgctagtaacaaaagatatgcagaatgccttacggttgcgtgatgaaattcca
caattcacccacgctccaataaacatgctgtcagattgggaaacattgccttacgatagt
ttttcgccccatcaagaaatcatttcaacccgtttatctacgctgtatcaattacctttc
atgatgaaaggcgttcttatcttgcctgttaatacattgatgcaacgggtttgcccgcat
gaatacctcagagggcatgctttgatcatgagtaaagggcaacgactttcccgtgacaaa
ttacgtgccgatctggagcaagccggttatcgcagtgtggatcaagtgcttgagcatggt
gaatttgctacacgcggcgctctgtttgacctcttccctatggggagtgaacacccttac
cgtatcgatttttttgatgatgaaatcgatagcctgcgtacttttgacgtggacagccaa
cgtacactcgcggaagtggaaaaaatcagtttactgcctgcccatgaattcccaacagat
aaagaagctatcgaattatttcgcagccaatggcgtgagcagtttgaagttcgccgtgat
gctgaacatatttatcagcaagttagtaaaaaaacgctaccggcaggtattgaatactgg
caaccattgttctttgagcagcctttatccacactctttgattacttgccagaaaacacc
ttgcttattacacaagacctaatagcaacagccgaacgtttttggcaggacacagaacaa
cgttttgagagccgtaaagttgacccaatgcggccattactgccacctgaacgcatttgg
cttcctgtcgataaactattcgctgaattgaaaaactggccccgcctccaaatcagaaac
gaagaactgccacaaaaggccgggagtatcaatctcacttaccagcctttacccgatgta
tccgttgctgcgcatcaaaaagcccctttggataaagtacgccgttttatagaacagttt
agcggtaagatcattttttcagtggaaagtgaaggacgccgggagtctgtaaccgaatta
ctatcgcggatcaaaattcatccaatcaaaatacaacagttgacggatgctaaggagccg
gactgttttttaatgatcggtgcagcagaacaaggcttcattgatgaagagaaaaaacta
gccctgatctgtgaaagcgacatgcttggtgagcgtgtgagtcgtcgccgtcaggataac
cgacgcacaatcaacactgataccttgatccgtaacctcgcagaattgcgtcatggtcaa
cccgttgtacaccttgaacatggtgttggacgctaccaagggctaacgacactggaagca
ggcggaattaaggctgaatacctgatcctgacctacgccggagaggacaaattgtatgtc
cccgtctcctccctacacttaatcagtcgttacgctggaggcgcagaggaaaatgcgcct
ctgcacaaacttggtggtgatgcctggaataaagcgcgccagaaagcagcagaaaaagtc
cgtgatgtcgcggctaaattactggatgtatatgcacggcgtgccattaaacctggtttt
gcgtttaagcacgatcgggagcagtatcaactgttctgtcagagtttcccgttcgataca
acaccggatcaagaacaaaccatcaatgccgtattgagtgatatgtgtcagcccatcgcc
atggacaggctggtatgtggtgacgttggtttcggtaagacagaagtggcaatgcgcgct
gcttttaccgctatcaataataataaacaagtcgctgttttagttccgactaccctactg
gctcaacagcattatgacaatttccgcgatcgttttgcgaattggcctgtacatattgaa
gttatgtcccgattccgcagtgctaaagaacagcaacaagttatagatatggcggcagag
ggaaaagtcgatattatcatcggcactcataaactgttacagaatgatctccgttggaaa
gatctgggattattggttgttgatgaagagcatcggtttggtgttcgtcacaaagagcgc
attaaagctatccgtgcaaatgttgatgttctgaccatgacagcaacccccattccccga
acgctcaatatggcaatgagtggtatgcgcgatttatcaattattgccacaccaccagcg
cgtcgtctggcagtgaaaacttttgtgcgtgaatatgatagcttagtggtccgagaatct
atcctgcgtgaaattttacgtggtggtcaggtttactatctttataacgacgttgagaat
attgagaaagcaaaaaatcgattggaagagttagttcctgaagccagagtcgttgtcggc
catgggcaaatgcgcgaacgtgatctggaacgagtcatggcagattttcatcatcagcgt
tttaatgtgctgatatgcactacgattattgaaacaggtattgatattcctaccgccaat
accattattattgaacgggcagaccattttggtctggcgcaattacatcaattgcgggga
cgtgttggccgctctcaccaccaggcttatgcttatttattgactcctcatccaaaagcg
atgaccacagacgcccaaaaacgactggaagcaattgcctctcttgaagatctgggggct
ggatttgcgctggcaactcatgatctggaaatcaggggagccggtgaacttctgggcgaa
gaccaaagtggtcaaatggcgagtatcggtttcactctctatatggagttactggaaagt
gcagttgatgcactcaaaaatggacgagagccatcacttgaagatctcaccacgaaccaa
accgaagtagaactgcgcatgccggtacttttgcccgatgattatattcctgatgtgaat
atgcgcctttctttctataaacgtattgcaagtgctcaaaatgacgatgagctggcagaa
ttgaaggttgaattaattgaccgattcggtacattacctgatccgggccgacagttattg
caatctgcttctatccgcctgacagcccaagaattgggaattaggcgtatagaatcccat
gaaaaaggtggctttattgaatttagccaaaacaacaaagtggaccccaattacctcatc
ggcttattacaaactcagcccaacatttaccggctggatgggccttctaaattaaaattc
atgactgatttaaccgaaagggcaacacgttcatcgttcatccaaacattattggaaaca
ttcgaacaacatcagatataa
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integrated database retrieval system
