Xenorhabdus budapestensis: HGO23_09735
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Entry
HGO23_09735 CDS
T07176
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xbu
Xenorhabdus budapestensis
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xbu03032
]
HGO23_09735 (topA)
03400 DNA repair and recombination proteins [BR:
xbu03400
]
HGO23_09735 (topA)
Enzymes [BR:
xbu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HGO23_09735 (topA)
DNA replication proteins [BR:
xbu03032
]
Prokaryotic type
DNA Topoisomerases
HGO23_09735 (topA)
DNA repair and recombination proteins [BR:
xbu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HGO23_09735 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
CK_II_beta
Motif
Other DBs
NCBI-ProteinID:
QTL41549
LinkDB
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Position
2168032..2170629
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AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGAASQKSSSSSTDKNKKKTK
KDEKTALISRMGVDPYHGWVANYQILPGKEKVVAELKTLAEKAAHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAITQAFDKPGDLNLDRVNAQQARRFMDRVVGYMVS
PLLWKKVARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWQIYADLMAKGDVELHMEVTH
QEGKPFKPVNAEQAQAAVSLLEKARYKVIDREDRPTSSKPSAPFITSTLQQAASTRLGFG
VKKTMTMAQKLYEAGHITYMRTDSTNLSQDALGMVRGYIRDNFGDKYLPKEANVYSSKEN
SQEAHEAIRPSNVDVMAEELKDMEADAQKLYQLIWRQFIACQMTPAKYDSTTLTVQAGDF
ELRAKGRTLRFDGWTKVMPALRKGDDDRTLPVVETGTDLDLQKLLPSQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVNDRLGENFNELMNY
DFTARMEDQLDHVANDQADWKGVLDEFFINFSQQLDVASKDPEEGGMRPNPMVITSIECP
TCNRPMGIRTATTGVFLGCSGYALSPKERCKQTINLIPENEILNILEGDDAETNALRARR
RCSKCGTAMDSYLIDTQRKLHVCGNNPACDGYEVENGEFRIKGYDGPIVECDKCGSEMHL
KMGRFGKYMGCTNEECKNTRKILRSGEVAPPKEDPIPLPELPCEKSDAYFVLRDGAAGVF
LAASTFPKSRETRAPLVEELVRFKERLPEKLCYLAEAPVADPEGNKTVMRFSRKTKQQYV
SSEKNGKATGWTAFFVDGAWVVKEK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgttatagtggagtccccggcaaaagccaaaacaatcaataaatat
ctggggaatgactacgttgtgaaatccagtgtaggccatatccgtgatttgccgaccagt
ggtgcggcaagtcaaaagagttcgagctcatctaccgataagaataaaaagaaaaccaaa
aaagatgagaaaacagcactgattagccgaatgggagtcgatccctatcatggttgggta
gcgaattatcaaattttgcccggcaaagaaaaagtggtggcagagctgaaaacgctggct
gaaaaagcagcgcatatctatcttgcaacggaccttgaccgcgaaggagaagctattgca
tggcacttgcgggaagtgatcggcggggatgataagcgtttcagtcgcgttgtatttaat
gagattacaaagaatgcgatcactcaggcttttgataaaccgggtgacttgaaccttgat
cgtgttaacgcacaacaggcacgtcgctttatggatcgtgtagttggttacatggtttca
ccactactatggaaaaaagttgccagggggttgtctgccgggcgggttcaatccgtagcg
gttcggcttgttgttgaacgggaacgcgaaatcaaagcatttgttcctgaagaatactgg
cagatatatgcggatttaatggctaaaggggacgttgagctccatatggaagttacccat
caagaggggaaaccattcaagccagttaatgcggagcaggcacaagcggcggtgtctctg
cttgaaaaagccagatataaagtcatcgatcgcgaagaccgcccaacctcaagtaagccg
agtgcaccatttattacttctaccttgcaacaggctgccagcaccagacttggttttggt
gttaagaaaaccatgacaatggcgcaaaagttatatgaagcaggtcacattacttatatg
cgtactgactcaactaacttaagtcaggatgctttgggtatggttcgaggttacattcgt
gacaactttggtgacaaatacctgcctaaagaggctaatgtctatagcagcaaagagaat
tcgcaagaagctcatgaagctatccggccttctaatgttgatgtcatggctgaagagctg
aaagacatggaagcggatgcccagaaactgtatcagcttatctggcgtcagtttattgcc
tgtcagatgacacctgcgaaatacgattctactacgctgacagttcaggcgggtgatttc
gaattgcgggcaaaaggccgtactttacgttttgatggctggacaaaagtcatgccggcg
ttacgtaaaggggacgatgatcgtactttgcctgttgtggaaacaggtactgatcttgat
ttacaaaagttgctgccaagtcagcacttcactaaaccaccagcgcgtttcagtgaagcc
tctctggtcaaagaattagaaaagcgtggcattggccgcccatcaacttatgcatcaatt
atttccactatccaagatcgtggttatgtgcgggttgaaaaccgtcgcttttatgcggaa
aaaatgggtgaaattgtcaatgatcgtttgggagagaatttcaacgaattgatgaactat
gattttacggcaagaatggaagatcaacttgaccacgttgcgaatgatcaagctgattgg
aaaggagtgctggatgagtttttcatcaatttcagtcagcaattagacgttgccagcaaa
gacccagaagagggcggaatgcgcccgaatccaatggttatcacctctattgagtgtccg
acctgtaaccgtccaatggggattcgcacggcaactacaggcgtatttcttggctgttca
ggttacgcgctgtcaccaaaagagcgttgcaaacaaaccattaacttgatcccggaaaat
gaaatactgaatattcttgaaggggatgatgcggaaactaatgcgctgcgtgcccgtcgt
cgttgtagcaaatgtgggacggcgatggatagctatctaattgatacccagcgtaaattg
catgtttgtggtaataaccctgcgtgtgatggttatgaagtagaaaacggagaattccgt
atcaaaggttatgatgggcctattgttgaatgtgataaatgtggctcagaaatgcacctg
aaaatgggacgtttcggtaaatatatgggatgtacaaacgaagagtgtaaaaatacccgt
aagatccttcgtagcggggaagttgcaccaccgaaagaagatcccattcctttacctgaa
ttgccatgtgaaaaatctgatgcctattttgtcctgcgtgacggtgccgctggtgtgttt
ttagctgccagtacattcccgaaatcacgtgaaacacgcgcacctttagttgaagaactt
gtgaggtttaaggagcgtctgccggagaaactgtgttatctggcggaagcgcctgtggcc
gatcctgaaggtaataagactgttatgcgttttagtcgtaagacaaaacaacaatatgtt
tcttcagagaagaatggcaaagcgaccggatggacagcattttttgttgatggtgcctgg
gtagttaaagaaaaataa
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