Xenorhabdus budapestensis: HGO23_10595
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Entry
HGO23_10595 CDS
T07176
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
xbu
Xenorhabdus budapestensis
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xbu03016
]
HGO23_10595 (rnd)
Enzymes [BR:
xbu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HGO23_10595 (rnd)
Transfer RNA biogenesis [BR:
xbu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HGO23_10595 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QTL38372
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All DBs
Position
complement(2417144..2418274)
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AA seq
376 aa
AA seq
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MNYQLITSDAQLQSICNRAKQHARIALDTEFVRTRTYYPHLGLIQLFDGEQLSLIDPLSI
SQWQPLRELLTDPDVLKFIHAGSEDLEVFWNSFQCMPAPIIDTQVLAAFAGHPLSCGFAT
LVAEYLSVELDKSESRTDWLARPLSEKQCEYAAADVYYLLPLADILMAKTEQLGYFGAAK
DESALIAQRRKEVLMPECAYKDISNAWQLRPRQLACLKKLAAWRLNQARERDLAVNFVIR
EENLWQVARYMPTSLGELDALGLSGQEIRCHGRRLLAMAAESRDLPEEECPAQIMNLIDY
PGYRKAFKEIKSLITQVSESHSFNAELLASRRQINQLLCWHWKLKSPEQQPELIRGWRGK
WLAEPIAEILENYSAS
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgattacctccgatgctcagttgcagtccatctgcaatcgggcaaaa
caacatgcaagaattgcactggacacagaatttgtacgtacaaggacgtattatccccac
ttaggtttgatacaactgtttgatggtgagcaactttctctgatcgatccccttagcatt
tcgcaatggcaacctttgcgggaattattgactgatccggatgtattaaaatttattcat
gctggcagtgaagacttagaggttttctggaatagctttcaatgtatgcctgcacctatt
atcgatactcaggtattggcagcgtttgctggtcatccattatcgtgtgggtttgcaaca
ttggttgcagaatatctgagcgtggaattggacaaaagtgaatcccgtactgactggctg
gctcgtccgttgagcgaaaaacagtgtgaatatgcggcagcagatgtttactacttatta
ccgctggccgatattttgatggcgaaaacagaacagctaggatattttggggcggcaaaa
gatgaaagtgctctgattgcccaacgtcgtaaagaagtattaatgccggaatgtgcttac
aaagatatcagtaacgcatggcagttgcgtcccaggcagttggcttgcttaaaaaaattg
gctgcatggcgtttgaatcaggctcgtgaacgggatttggctgttaattttgttattcgt
gaagaaaatttgtggcaggtagcccgttatatgccgacttcactgggagagttggatgct
ttaggtttaagcgggcaagaaatccgttgtcatgggcgtcggttactggctatggccgca
gaaagcagagatcttccagaagaagaatgtccggctcaaattatgaatttgatagactat
ccgggttatcgcaaagcgtttaaagaaattaaatcattgattactcaggtgagtgaatct
cactcttttaatgctgaattgttagcttctcgtcggcaaattaatcaattgctctgttgg
cactggaaattgaaatcaccggagcagcaacctgaattaattaggggctggcgtggaaaa
tggctggctgagcctattgctgaaatattggaaaattattcagcatcatag
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