Xenorhabdus budapestensis: HGO23_12300
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Entry
HGO23_12300 CDS
T07176
Symbol
ldtD
Name
(GenBank) L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
xbu
Xenorhabdus budapestensis
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xbu01002
]
HGO23_12300 (ldtD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xbu01011
]
HGO23_12300 (ldtD)
Peptidases and inhibitors [BR:
xbu01002
]
Cysteine peptidases
Family C82
HGO23_12300 (ldtD)
Peptidoglycan biosynthesis and degradation proteins [BR:
xbu01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
HGO23_12300 (ldtD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
QTL38663
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All DBs
Position
complement(2848786..2850513)
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AA seq
575 aa
AA seq
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MANYTVRLLKFSFIFSILVVSEGTFANQQNGLIANDVQQLSGEQKKADINISSTQIVPVF
STNSLEESKEQLQNLLPKKITPVFSEQLARLYSVNNMKPLWQDKNAIQYFERQLFDLSLA
GFQPQFGKWLVQLNYPELSDMGRDVILSDAMLGYLHFINNIHKKGDSWLYSKTPYKIDLP
SYDLIDKWQKHISSNSLSGYISGLSPAHSMYENMRSEMLKQLSDKQPWSEFSMKEMLKPG
QSSKSVTVLRNILIRTGTLESSAVRPENKVYNKELVAAVKRFQSLHGLSADGVIGQSTRV
WLNTTPQTRARIMALNMQRLRIIPDNLPTAILVNIPNYSLFYYLDGEKVLTSKVVVGRPS
RKTPIMSSEMDNVVINPPWTVPVSMTRKDIAPRAMRDPNYFRSRGYTVFSSWHSDATVIN
PSSINWRVITPGNFPYRIRQAPGPTNSLGRFKFNMPNSEAIYLHDTPNQASFNREMRAVS
SGCVRVNKAPELANMLLGDAGWDKSRVSNSLKTWATKYVNISKKIPVFLYYQTAWIDEKG
KPQYRADIYEYDSNARKKSELVSQALVTKRDTLSP
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattacacggtaagattactgaaattttcttttatttttagcatattagtggta
tcagagggaacctttgcaaatcaacaaaatggattgatagcaaatgatgtccaacaattg
tcaggggagcaaaaaaaagcagatatcaacatatcctctactcagatagttcctgtattt
tcaacaaattctcttgaagaaagtaaggagcaattacagaacttattgccgaaaaaaata
actcctgttttctctgagcaattagccagattatattcggtaaataacatgaagccatta
tggcaggataaaaatgctatacagtattttgaacggcaattatttgatttgtcgttagct
gggtttcagcctcaatttgggaaatggcttgtgcaacttaattatcctgaattaagtgat
atggggcgagatgtcattctatctgatgctatgctaggttatcttcattttattaataac
attcataagaaaggggattcatggttatatagcaaaacaccttataaaatcgatttacct
tcttatgatttaattgataaatggcaaaagcatatttctagtaatagccttagtggttat
atttcgggattatctcctgctcattccatgtatgaaaatatgcgcagtgagatgctaaaa
caattatcggataaacagccgtggtctgaattttcgatgaaagaaatgttaaaaccggga
caaagtagtaaaagtgtcaccgtattaagaaatatattaattcgaactggtactttggag
tcatcagcagtcaggcccgaaaataaggtctataataaagagttagttgctgctgtaaaa
cgcttccaatctttacatggattatccgctgatggtgttattgggcagtctacaagagta
tggttaaatactacgccacaaacccgtgccagaattatggctttgaatatgcagcggtta
cgcatcattcctgacaatcttcccaccgcgattttggtgaatattccgaattactcgtta
ttttattatctggatggtgagaaagttttaacttctaaagttgttgttggacgcccaagc
cgaaagacaccgattatgagcagtgagatggacaatgtggtaatcaatcctccctggact
gttcctgtcagtatgacccgtaaagacatagcaccaagagctatgcgtgatcccaattat
tttcgtagccgtggttatactgttttttccagttggcatagtgatgctacagttatcaat
ccctcatcaattaattggcgagtgataacacctggcaatttcccttatcggatacggcaa
gctccaggcccaactaactcattaggacgatttaaatttaatatgccaaattcagaggcg
atatatttgcatgacacgccaaatcaggcttcattcaatcgagaaatgagagcggttagt
tcaggttgtgtgcgtgttaacaaagcacctgaattggccaatatgttattgggagatgcg
ggttgggataaaagtcgtgtgagtaattctttaaaaacgtgggcaacaaagtatgtgaat
atatcgaaaaaaatcccagtattcctttattatcagacagcttggattgatgaaaaagga
aagcctcaatatcgggcagatatctatgaatatgatagtaatgccagaaaaaaatctgaa
ctggtgtcccaagccttggtaaccaaacgggatacattgtcaccataa
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