Xenorhabdus budapestensis: HGO23_13185
Help
Entry
HGO23_13185 CDS
T07176
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xbu
Xenorhabdus budapestensis
Pathway
xbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGO23_13185 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbu03019
]
HGO23_13185 (rhlE)
Enzymes [BR:
xbu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HGO23_13185 (rhlE)
Messenger RNA biogenesis [BR:
xbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HGO23_13185 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
UTP25_NTPase-like
AAA_22
DUF6256
Motif
Other DBs
NCBI-ProteinID:
QTL38828
LinkDB
All DBs
Position
complement(3018587..3019912)
Genome browser
AA seq
441 aa
AA seq
DB search
MNFESLGLKADILRAVQEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPVL
QLLSESPIQSKSRRPVRALILTPTRELAAQVGENVRNYSKYLRLRSFVVFGGVSINPQMM
KLRGGIDILVATPGRLLDLEHQNAVDLSRVEILILDEADRMLDMGFIHDIRRVLNKLPAK
RQNLLFSATFSDEIKNLANKLLRDPVSVEVARRNSASEQIDQSVHFVDKKRKGELLSYMI
GSQNWQQVLVFTRTKHGANRLAEQLNKDGVTAAAIHGNKSQGARTRALADFKTGQIRALV
ATDIAARGLDIDQLPHVVNYELPNVAEDYVHRIGRTGRAEATGQAISLVCVDEHKLLKDI
ERLLKREIPRIALPGYEPDPSIKAEPIQNGRNGRSNQSRGQDQRSSNKQDDQQHHSRSPR
GKGSPSQQRRYRRSVKAAAGE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgagtcactcggcttgaaggctgatattttgcgtgccgttcaagaacaaggc
tatgcagaacctacccctattcagcaacaggcaattcctgttgtgctatctggtaaagat
ctcctggccagtgcccagacaggaacggggaaaacggcgggctttactttacctgtcttg
cagttattgagcgaatctcccattcaatccaagagccgccgcccggtcagggcattaatc
ctgacaccaacccgtgaattggccgcacaagtcggtgaaaatgtgcgtaattacagcaaa
tacctccgattgcgttcatttgtagtatttggtggtgttagcatcaatccacaaatgatg
aaattacgtggtggaatagatattttggtcgccacaccgggtcgtttgctggatctggaa
catcagaatgccgtggacttatcccgtgtggaaattttgattttggatgaagctgatcgc
atgttagatatgggatttattcatgatatccgtcgggtactgaataaactacccgctaaa
cgtcagaacttactgttttcagctacattctctgatgaaatcaaaaatcttgctaataaa
ttgctgcgtgatccggttagtgttgaagtcgctcgccgtaactcggcttctgaacagatc
gaccagtctgtccattttgtggataagaaacgcaagggagaattgctttcttacatgatt
ggcagccaaaactggcagcaggtattggtgtttacccgcactaaacatggtgcgaaccgt
ctggcagaacaacttaataaggatggtgttactgcggcggcgattcatggtaataagagt
caaggggccagaactcgtgcattggccgattttaaaacaggccagatacgtgcgttggtc
gcaacggatattgctgctcgtggattggatatcgaccaattacctcacgttgttaactat
gaattacctaatgttgcagaggattacgtacatcgtattggccgcactggtcgtgcagaa
gcaacagggcaggcaatatcactggtgtgtgttgatgagcataaactattaaaagatatt
gaacgcttgctgaaacgggaaattccacgtatcgcgctccctggctatgaacccgatcct
tccatcaaagcggagcctatccagaatggacgcaacgggcgcagtaatcaatcccgtggt
caggatcagcgaagcagtaacaaacaggatgaccagcaacatcatagtcgcagcccacgt
ggcaaaggttcaccatcacagcagcgccgttatcgcaggtcggtcaaagcggcagcagga
gagtaa
DBGET
integrated database retrieval system
