Xenorhabdus budapestensis: HGO23_16605
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Entry
HGO23_16605 CDS
T07176
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xbu
Xenorhabdus budapestensis
Pathway
xbu03030
DNA replication
xbu03430
Mismatch repair
xbu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HGO23_16605 (dnaE)
03430 Mismatch repair
HGO23_16605 (dnaE)
03440 Homologous recombination
HGO23_16605 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xbu03032
]
HGO23_16605 (dnaE)
03400 DNA repair and recombination proteins [BR:
xbu03400
]
HGO23_16605 (dnaE)
Enzymes [BR:
xbu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HGO23_16605 (dnaE)
DNA replication proteins [BR:
xbu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HGO23_16605 (dnaE)
DNA repair and recombination proteins [BR:
xbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HGO23_16605 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
MJ0607
Motif
Other DBs
NCBI-ProteinID:
QTL39409
UniProt:
A0A2D0J3F3
LinkDB
All DBs
Position
complement(3767597..3771079)
Genome browser
AA seq
1160 aa
AA seq
DB search
MTEPRFVHLRVHSDYSMIDGLAKTGPLVKKVVKLGMPAFAITDFTNLCGLVKFYGSAHSA
GIKPIIGADFYMESDQLGDEYAHLTILARNNEGYQNLTLLISEAYQKGYGAIGPTIKQEW
LVKHKAGLILLSGGRMGDVGKFLLRGNHVLVEQCLDFYQEHFPDCYYLELIRTGRQDEET
YLHAAVELAAEKNLPIVATNDVCFLESEDFEAHEIRVAIHDGYTLSDPKRPKKYSPQQYL
RSEQEMCGLFSDIPEALENSVEIAKRCNVTIRLDEYFLPKFPTGGMSTEDYLIEKSKQGL
EQRLTFLYPDPAIRAEKRTEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPLDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPIYCDPEGQNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMVNARRTKKNLEPIDIAAIPLDDQKSFDML
QRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSVFEDGAVEQGINGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIKG
VGEGPIEAIIEARQKGGHFKELFELCARVDIKKLNRRVMEKLIMSGAFDRLGPHRAALMS
SLEDALKAADQHAKAEAIGQTDMFGVLAEKPEQVENSYASTPKWPDQVVLDGERETLGLY
LTGHPITGYLKEIERYTNGLRLKDVNPTPRGQVTTVVGLVLTSKIVTTKRGNRIGICTLD
DRSGRLEAMLFSDALERYQHLLEKDKILIATGQVSFDDFSGGLKMTARELMDISEAREKF
ARGLAISLSDRQIDEQLLNRLRGTLEPHRSGTIPVHLYYQRVDARARLRFGATWRVTPTD
TLLTDLRTLLGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaccacgttttgtgcacttacgtgttcacagtgattattcaatgattgatggc
ttagccaaaacaggcccactggtaaaaaaagtggtcaaacttggtatgcctgcatttgca
atcacggattttactaacctgtgtggcttggtgaaattctatggtagtgcccatagtgcg
ggtattaagcccataattggggccgatttctacatggaaagcgatcagttgggtgatgaa
tacgcccatctgaccattctggcccgcaataatgaaggttatcagaatctgaccttactg
atttccgaagcctatcagaaaggctatggggcaattggcccaactatcaaacaagagtgg
ctggtaaaacataaagcggggctaatattgctgtctggcggacgtatgggtgatgtcggc
aagtttttgttgcgtggcaaccatgtgttagttgagcaatgcctcgatttttatcaggaa
cactttccagattgctactatttggaactcatccgcaccggacgtcaggatgaagagact
tatcttcatgctgctgttgaattagcagcagaaaaaaatcttccaattgtagcaaccaat
gatgtctgttttctggaaagtgaagattttgaggctcatgaaattcgagttgccatccat
gacggctatacactctctgatcctaagcgtccgaaaaaatacagtcctcagcaatatctg
cgcagtgaacaggagatgtgtgggcttttttctgacatccctgaagcattagaaaatagc
gtagaaattgcgaaacgttgtaatgttacgatccgtcttgatgaatatttcttgccaaaa
ttcccgacagggggtatgagcactgaagactatctgattgaaaaatcaaaacagggttta
gagcagcgcttaacattcctttatcctgatccggcaatcagggcagaaaagcgaacagaa
tatgatgagcgtctggatgttgagttgaaagtgatcaaccagatgggatttccgggctac
ttcctgatcgtgatggaatttatccagtggtcgaaagataacggtgtaccagtagggccg
ggacgtggttctggtgcaggttctcttgtcgcttatgccctgaaaattactgacctcgat
ccacttgaattcgatttactgttcgaacgtttccttaacccagaacgtatttccatgcct
gactttgacgttgatttttgtatggaaaaacgcgatcaggttattgaacacgttgctgat
atgtacgggcgagatgcagtatcacagatcatcacttttggtacgatggcggcaaaagcg
gtaattcgtgatgttgggcgagtacttggtcatccctatggcttcgttgatcggatatca
aagttggttccccttgatccgggaatgacgctggaaaaggcatttgcagcagagcctcag
ttacctgaaatttacgaagcggatgaagaagttaaggcgctgattgacatggcgcgtaaa
ctggaaggggtgactcgtaacgcaggtaaacatgcgggtggggtagttattgcaccgacc
aaaatcaccgattttgctcctatttactgcgatccagaaggtcagaacccggtcacccag
tttgacaaaaatgacgtggaatatgctggattagtgaagtttgacttcctcgggctgaga
acattaaccatcataaactgggcacttgagatggtgaatgcacgtcgtactaagaaaaat
ctggagccgattgatattgcggcaattccactggatgaccagaaaagtttcgacatgctg
caacgttctgaaacgactgctgtgttccagcttgaatcccgtggcatgaaagatttgatc
aagcgtctgcgccctgactgttttgaagacatgatcgctctggtagcactgttccgtccg
gggccgctgcaatcaggcatggtggataactttatcgaccgtaaacatgggcgggaagaa
atttcttatccagatgtcgaatggcaacatgagtccttaaagcctgtattagagccaacc
tatggcattatcttgtatcaggaacaggtgatgcagattgcacaggtattggcgggttat
accctcggtggtgcagatatgttgcgccgtgcgatgggtaagaaaaaaccagaggagatg
gctaaacagcgctcagtatttgaagacggcgcggtagaacaggggataaatggcgaactt
gcaatgaaaatcttcgatttagtggagaaattcgcaggttatggcttcaacaaatctcat
tctgctgcctatgcgttggtttcttatcagacattatggctaaaagcccattacccggca
gaatttatggctgccgtaatgacggctgatatggataatacagagaaagtcgttggtttg
gtggatgagtgctggcgtatggggctgaaagttttgcctcctgatatcaatagtggcttg
taccattttcacgtcaatgatgaaggcgaaattgtttatggcattggcgcgatcaaaggt
gttggtgaagggccgattgaagccattattgaagctcgtcagaaaggtgggcactttaaa
gagctgtttgagctgtgtgcccgcgttgatatcaaaaaactgaaccgccgagtgatggaa
aaactgattatgtcaggcgcattcgacaggctggggccacaccgtgcagccttaatgtcc
tcactggaagatgctctgaaagcagcggatcaacatgccaaggccgaggccattggtcaa
acggatatgtttggcgtgctagcagaaaagcctgaacaagttgagaattcatatgccagt
acgccaaaatggccggatcaggtggtattggatggtgagcgggagactctggggctatat
ttgaccggtcatccgatcaccggttatttaaaagagattgaacgatatacgaatggatta
cgtctaaaagacgtgaatccaacacctcgtgggcaagttacaactgtggtaggtttggtg
ctgacatccaaaattgtaacgaccaaacggggtaatcggattggtatctgcacattggat
gatcgctcagggcggctggaagccatgttgttctctgatgccctggaaagatatcagcat
ttgttggagaaggacaaaattttaatcgcaaccggacaagtcagctttgatgacttcagt
ggtgggcttaaaatgactgcccgggaattaatggatatcagtgaggcccgtgaaaaattt
gcgcgtgggcttgctatctcgttgtcagacaggcaaattgatgaacaattattgaaccgt
cttcgtggcacattggaaccacatcgttcaggtacgataccggttcatctttattaccag
cgggtggatgcccgtgcccgtttacgattcggggcaacatggcgggtaactccaacggat
acccttttgacagatctacgaactctgctgggtagcgagcaggtagaattagaatttgac
taa
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