Xenorhabdus budapestensis: HGO23_16865
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Entry
HGO23_16865 CDS
T07176
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
xbu
Xenorhabdus budapestensis
Pathway
xbu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HGO23_16865 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xbu03400
]
HGO23_16865 (recD)
Enzymes [BR:
xbu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HGO23_16865 (recD)
DNA repair and recombination proteins [BR:
xbu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HGO23_16865 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
UvrD-helicase
SH3_13
AAA_22
SLFN-g3_helicase
AAA_16
PhoH
nSTAND3
UvrD_C
TraI_hel_assoc_N
AAA_28
SRP54
DEAD
CbiA
AAA
T2SSE
MukB
ResIII
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QTL41779
LinkDB
All DBs
Position
complement(3824540..3826429)
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AA seq
629 aa
AA seq
DB search
MMSLLQQAVAQKLLRPLDVQFAYAMIEDENPLLLLITAYLSAEVGAGHVCLLLNRISPEH
LFEGRHTELVASLWTFVGEPNQQQMIAALQACPAIGDGQSPTPIILSGYRLYLQRMWQSE
RRIAAFFADVALADDIDEIQLRKILDELFGVAAASEIDWQKVAAAVAVTSRISVISGGPG
TGKTTTVAKLLAALIKLNEGKPLNIQLAAPTGKAAARLTESLGEAVNKLALTDEQRCNIP
EQAQTIHRLLGAQPESQKLRYHRDNPLALDILIVDEASMVDLPMMARLIDALPAKAKVIF
LGDKDQLASVEAGAVLGDICRFAEQGYSVDRAKQLTKLTGCQLVSYSVSEPEDLTLAVRD
CLCLLRKSYRFNSASGIGQLASAVNQGDSKCVAAVLRQSLPDVNFNPLAEDEDYQRLLIE
TTEGYYRYLALVNEKASEKTILAEFNRFRLLCALREGPFGVSGLNQRVEQLLHRKGMIAL
PKYTGNQFMENRSYAGRPIMILRNDSTLGLFNGDIGIMLKDQNNELKAYFQLSDGQIKPF
QPSRLPLHETAYVMTVHKSQGSEFEHTALVLPTQFSPVVSRELVYTALTRAREKLTLYAH
KVVLSKAVATPTQRRSGLVDSFSCRRDAT
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
ataatgtcattattgcagcaagctgttgcccaaaaattgctgcgtccgttagatgtgcag
tttgcctatgcgatgattgaagatgaaaatccattgttattgctgatcactgcctatttg
agtgcagaagtgggggctggtcatgtttgcctgcttttgaacaggatctcacctgaacat
ttatttgaaggacgacacactgagttagtggcatcactgtggactttcgtaggagaacct
aatcaacaacaaatgattgctgctttgcaggcatgtccggcaataggcgatgggcaatct
cctacaccgataatactttctggttatcgcctttacttgcagcggatgtggcaaagcgaa
cgtcggatagccgcgttttttgctgatgtggcattggctgatgatattgatgaaattcag
ctacggaaaattttagatgagctttttggtgttgctgctgcaagtgaaatcgattggcag
aaagtggcggcagcagttgctgtcaccagtcgtatttctgttatctctggtgggccggga
accggaaaaacaacgacggtagcgaaattactggccgcattgattaaattgaacgaagga
aagccattgaatattcaactggcggctcctacagggaaagcggctgccaggttgactgaa
tcgcttggtgaggctgtcaacaaacttgctttgacagatgaacaacggtgcaatatccct
gagcaggcacaaaccatccatcgcttgctaggtgcacagcctgaaagccaaaaactccgt
taccaccgtgataatccgcttgcccttgatatcctgattgttgatgaagcctccatggta
gatttacccatgatggcgcgtctgattgatgctttgccagcaaaagcaaaagtgattttt
ctgggagataaggatcagctggcttctgtagaagcgggagcggtattgggagatatctgt
cgttttgctgaacaaggatacagtgtcgatcgtgcaaaacaactgacgaagttaacgggt
tgtcagttagtgtcatattcagtgtctgagccagaagatttaactttggcagtacgggat
tgtttatgtttgctgcgtaaaagctatcgttttaattctgcctctggtattgggcaacta
gcttcagcagtcaatcagggggacagtaagtgtgttgctgctgtattaaggcaatctctg
cctgatgtgaattttaatcccctagcagaagatgaagattatcagcgtttgttgattgaa
accacagaaggttattaccgctatttggcgctggtgaacgaaaaggcatctgaaaagact
atcctggcagaatttaaccgtttcaggttgttatgtgctttaagagaagggccgtttggt
gtcagtggattgaaccagcgagtggaacaattgctgcatcgtaaaggaatgattgctttg
cccaaatatacgggaaatcagtttatggagaataggagctatgccgggcggccgatcatg
atcttgcgcaatgacagtacattgggactgtttaatggtgatatcggtattatgcttaag
gatcagaataatgagttgaaagcctatttccagttatctgacgggcagataaaacctttt
cagccaagccgtctgcccttacatgaaacggcttatgtaatgacagtgcacaaatcacaa
ggctctgagtttgagcatactgcattagtgttgccaacccagttttctcctgttgttagt
cgcgagctggtttatacggctttgacccgcgcccgtgagaaattgacgctatacgcacac
aaggtggttttgtccaaggcagttgcgacacccactcaaaggcggagtgggttagtggat
tcgttctcttgccgtcgtgacgcaacttga
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