Xenorhabdus budapestensis: HGO23_17450
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Entry
HGO23_17450 CDS
T07176
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xbu
Xenorhabdus budapestensis
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xbu03016
]
HGO23_17450
Enzymes [BR:
xbu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HGO23_17450
Transfer RNA biogenesis [BR:
xbu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HGO23_17450
Prokaryotic type
tRNA splicing ligases
HGO23_17450
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QTL39550
UniProt:
A0ABX7VGH0
LinkDB
All DBs
Position
complement(3961826..3962401)
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AA seq
191 aa
AA seq
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MKTTEIKTNGYNLLTQENGAPVKMWANGVPVDPKAITQLQNTAKMLFVFKHMAVMPDVHF
GKGSTIGSVIPTGGAIIPAEVGVDIGCGMIAVRTSLVASDLPDNLLNIRHAIEVAVPHGR
NINRGGRDKGSWHDAPEMKKRFTVSDQKRATAHVECRKDSDVIDEIPMAYKDIDAVMAAQ
SSLVKVVHTLR
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaactgaaataaaaaccaacggttataacttattgacgcaagagaatggtgct
ccggtaaaaatgtgggcgaatggagtccctgttgatccaaaagccattactcaattgcag
aataccgccaagatgctttttgtatttaaacatatggcggtaatgccggatgttcatttt
ggtaaaggttctaccatcggtagtgtgatcccgactggtggtgccattatcccggcagag
gttggggtggatatcggctgtggaatgattgcagtccgtacttcgctggtggcatcagat
ttaccggataatttgttgaatattcgtcatgccatcgaagtcgctgtgccacatggacgt
aatataaaccgtggaggacgagataaagggtcatggcatgacgcgccggaaatgaaaaaa
cgctttaccgtgagtgatcagaaacgagctactgctcatgtagagtgtcgtaaagatagc
gatgtgattgatgagatcccgatggcgtacaaagatattgatgcagtaatggcagcccag
tcttcgctggtgaaagttgtacatactttgcgttag
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