Xenorhabdus budapestensis: HGO23_17685
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Entry
HGO23_17685 CDS
T07176
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xbu
Xenorhabdus budapestensis
Pathway
xbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGO23_17685 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbu03019
]
HGO23_17685 (pnp)
03016 Transfer RNA biogenesis [BR:
xbu03016
]
HGO23_17685 (pnp)
Enzymes [BR:
xbu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HGO23_17685 (pnp)
Messenger RNA biogenesis [BR:
xbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HGO23_17685 (pnp)
Transfer RNA biogenesis [BR:
xbu03016
]
Prokaryotic type
tRNA degradation factors
HGO23_17685 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
KH_2
aRib
KH-I_KHDC4-BBP
S1_RRP5
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
QTL39592
UniProt:
A0A2D0J577
LinkDB
All DBs
Position
complement(4012940..4015093)
Genome browser
AA seq
717 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSV
NPQVHPDIVAMIGSSAALALSGIPFNGPIGAARVGYINDQYVLNPTSNELKNSRLDLVVA
GTEGAVLMVESEAELLTEEQMLGAVVFGHEQQQIVIDNINALAAEAGKEKWDWAPEPVNQ
SLHDRVAELAESRLGNAYRITEKQERYAQVDTIKEEVSAIILAEAAENSVELEETEVLEV
LSVLEKNVVRGRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATL
GTERDAQVIDELMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP
SINEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFV
VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQIALNQAKGARLHILNV
MEQAIQSPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK
IAATDGEKARHAISRIEEITAEVEVGRIYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD
KRVEKVTDYLQIGQEVPVKVLEIDRQGRIRLSMKEAAVNTMLNTTDEASQSPESSVE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgattgttcgtaaattccagtatggtcagcacactgtgaccatcgaaaca
ggcatgatggctcgtcaggcgacagcggctgttatggtaaatatggatgacactgcggta
tttgttaccgttgttggtcagaaaaaagtaaaaccaggtcaggatttctttccactgact
gttaactatcaagaacgtacatatgctgctggccgtattcctggcagttttttccgtcgt
gaaggccgtccgggtgaaggtgaaacccttgttgctcgtcttatcgaccgtccactgcgc
ccactttttccagaaggtttcctgaacgaagttcaaatcattgcaactgttgtttctgta
aacccacaggttcatccggatatcgttgctatgatcggctcttctgcggcattggcattg
tctggcattccattcaacggcccaattggcgcagcacgtgttggttatatcaatgatcag
tatgtactgaacccaaccagcaatgagctgaaaaacagccgtctggatttggttgttgca
ggtactgaaggcgctgtactaatggttgaatccgaagcggagctgctgacagaagaacag
atgctgggtgcggtggtgttcggccatgaacaacagcagattgtgattgataacatcaat
gcactggctgctgaagcgggtaaagagaagtgggattgggcaccagagcctgtcaaccaa
tctctgcatgatcgcgttgctgagttggcagaaagccgtctgggcaatgcttaccgcatt
actgaaaaacaggagcgttacgctcaggttgatactatcaaagaagaagtttctgcaatc
attctggcagaagcagcagaaaatagcgttgagctggaagagacagaagtgcttgaagtg
ttgtctgttctggagaaaaatgtcgttcgtggccgcgtactgcgtggtgagcctcgcatt
gatggtcgtgaaaaagatatggttcgtgcactggacgttcgtactggcgtattgccacgt
actcacggttcatctctgtttacccgtggtgaaactcaggcactggttacagcaacactg
ggtactgaacgtgatgcccaggtgatcgacgagctgatgggagagtacacagatcgcttc
ctgttccattacaacttccctccatactctgttggtgaaacgggtatggttggttcgcca
aaacgtcgtgaaattggtcacggtcgtttggcgaagcgtggtgttctggcggtaatgcct
agcatcaacgagttcccgtatacggttcgtgtggtttctgaaattacggaatccaatggt
tcttcttctatggcttccgtctgtggtgcttcattggcactgatggatgcaggtgtaccg
attaaggcagcagttgcaggtatcgccatggggctggtgaaagaaggcgataactttgtg
gttctttctgacattctgggtgatgaagatcatctgggtgatatggactttaaagttgcg
ggtagccgtgatggtatcagcgcattgcagatggacatcaaaattgaaggtatcacccgt
gaaatcatgcaaattgctttgaatcaggccaaaggtgctcgtttacatatcctgaatgtg
atggagcaggcaatccagagcccacgtaatgacatttctgaatttgcgccacgtattcac
accatcaagatcaacccagataagatcaaagatgtgatcggtaaaggtggttccgtgatc
cgtgctctgactgaagaaacaggcacaactattgaaatcgaagatgacggtactgtgaag
atcgcagcgactgatggtgaaaaagctcgtcatgctatcagccgtattgaagagattact
gctgaagtcgaagttggccgtatttatactggtaaagttacccgtattgttgactttggc
gcatttgttgcaattggcggtggtaaagaaggattggtacacatttctcagatcgcagac
aagcgtgtagagaaagtaactgactatttacagattggtcaggaagttcctgtcaaggtg
ctggaaattgaccgtcagggtcgtatccgtctgagtatgaaagaagcagcagttaatact
atgctgaatactaccgatgaagcatcacaatcaccggaatcatcagtagaataa
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