KEGG   Xenorhabdus budapestensis: HGO23_17950
Entry
HGO23_17950       CDS       T07176                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
xbu  Xenorhabdus budapestensis
Pathway
xbu02024  Quorum sensing
xbu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xbu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HGO23_17950 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    HGO23_17950 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xbu03019]
    HGO23_17950 (hfq)
   03036 Chromosome and associated proteins [BR:xbu03036]
    HGO23_17950 (hfq)
Messenger RNA biogenesis [BR:xbu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     HGO23_17950 (hfq)
Chromosome and associated proteins [BR:xbu03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    HGO23_17950 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: QTL39639
UniProt: A0A2D0J553
LinkDB
Position
complement(4064924..4065226)
AA seq 100 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHGSNANVGSSVGNYQANTSSAAQQENDIAE
NT seq 303 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttgcaagatccattcctgaacgcattacgacgtgaaagggtc
ccggtttctatttatttagtcaacggcatcaaattgcagggtcaaattgaatcttttgac
caatttgtcattttgctgaaaaacacagtcagtcagatggtttataaacacgccatttct
actgttgtgccttcccgcccagtgtctcaccatggtagcaatgcaaatgtgggatccagt
gtaggaaattatcaggctaatactagctcggcggcacaacaggaaaatgatatcgctgaa
taa

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