Xenorhabdus bovienii CS03: XBW1_1963
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Entry
XBW1_1963 CDS
T03845
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
xbv
Xenorhabdus bovienii CS03
Brite
KEGG Orthology (KO) [BR:
xbv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xbv03016
]
XBW1_1963 (rnd)
Enzymes [BR:
xbv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
XBW1_1963 (rnd)
Transfer RNA biogenesis [BR:
xbv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
XBW1_1963 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
CDM89320
UniProt:
A0A0B6X720
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Position
1885173..1886300
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AA seq
375 aa
AA seq
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MNYQLITSDAQLQSICERAKKHATIALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLDI
SEWQPFRELLTDPDVLKFIHAGSEDLEVFWNSFQCLPTPMIDTQVLAAFIGHPMSCGFAT
LVAQYLHVELDKSESRTDWLARPLSGKQCEYAAADVYYLLPLADILVAATKQAGYMDAAQ
DESYLIAQRRKEILMPECAYKDIGNAWQLRPKQLACLKKLAGWRLNQARERDLAINFVIR
EENLWQVARYMPTSLGELDALGLSGQEIRCHGRRLLVMVAESRDIPDEACPALITNLIDY
PGYRTAFKEIKSLVTQVSESHQFSVELLASRRQINQLLSSHWKLKSPDYQPELLRGWRGE
LLAEPVAEILANYPA
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgattacctccgatgctcaattgcagtcaatctgtgaacgggcaaaa
aaacacgcaacaattgcattagatacagaatttgtacgcacacggacgtattatccccaa
ttaggtttgatacaactgtttgatggcgaacaactttctctgattgatcctctcgatatt
tcagaatggcagccctttcgggagttgttgactgatccagatgtattaaaattcatccat
gctggtagtgaagatttagaggttttttggaatagctttcaatgtttgccaacaccgatg
attgatactcaggtactggctgcgtttattggccatcctatgtcgtgtggtttcgcaaca
ctggttgctcaatatcttcacgtggaattggacaaaagtgagtcccgcactgattggcta
gctcgtccattgagtggaaagcagtgtgaatacgccgcggcggatgtttattatttattg
cctttggccgatattctggtggcggcaacgaagcaggcgggatacatggatgcggcacaa
gatgaaagttatctgatcgcccaacgccgcaaagaaatattgatgccagaatgtgcttac
aaagatataggtaacgcgtggcaattacgtccaaagcagctggcctgtttgaaaaaactg
gcgggatggcggttaaatcaggcacgggaacgggatttggcaatcaattttgttattcgc
gaagaaaatctatggcaggtagcccgttatatgccgacttctttgggggagctggatgcc
ttaggattaagtgggcaggaaatccgttgtcatgggcgtcgtttgctggtaatggttgca
gagagcagagatattccagatgaagcctgtccggctctcattacaaacctcattgattat
ccgggctatcgtacggcctttaaggaaattaaatcgctggtcactcaggtgagtgagtcc
catcagtttagtgtggaattattggcttcccgtcggcaaatcaatcaattgctcagctct
cattggaaactgaaatcacccgattatcagcctgaattactccgtggatggcgaggagag
ttgctggctgagcctgttgctgaaatattagcaaattatccggcttaa
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