Xenorhabdus bovienii CS03: XBW1_2031
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Entry
XBW1_2031 CDS
T03845
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xbv
Xenorhabdus bovienii CS03
Brite
KEGG Orthology (KO) [BR:
xbv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xbv03032
]
XBW1_2031 (topA)
03400 DNA repair and recombination proteins [BR:
xbv03400
]
XBW1_2031 (topA)
Enzymes [BR:
xbv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
XBW1_2031 (topA)
DNA replication proteins [BR:
xbv03032
]
Prokaryotic type
DNA Topoisomerases
XBW1_2031 (topA)
DNA repair and recombination proteins [BR:
xbv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XBW1_2031 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
NPP16_N
CK_II_beta
Motif
Other DBs
NCBI-ProteinID:
CDM89388
LinkDB
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Position
1928233..1930824
Genome browser
AA seq
863 aa
AA seq
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MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGAASQKSSNSSTDKNKKKKD
EKTALVNRMGVDPYHGWEADYQILPGKEKVVAELKTLAEKADHIYLATDLDREGEAIAWH
LREVIGGGEARFSRVVFNEITKNAITQAFDNPGELNIDRVNAQQARRFMDRVVGYMVSPL
LWKKVARGLSAGRVQSVAVRLIVEREREIKVFVPEEYWQLHADLMAKGDIALQMEVTHEG
GKPFKPVNAQQTQAAVSLLEKARYKVLDREDRPTSSKPGAPFITSTLQQAASTRLGFGVK
KTMMMAQRLYEAGHITYMRTDSINLSQDALDMVRGYINDHFGDKYLPKTANIYSSKENSQ
EAHEAIRPSNVDVMAEELKDMEADAQKLYQLIWRQFVACQMMPAKYDSTTLTVQAGNFEL
RAKGRTLRFDGWTKVMPALRKGDEDHTLPVVEVGTELDLQQLSPSQHFTKPPARFSEASL
VRELEKRGIGRPSTYASIISTIQDRGYVRGENRRFYAEKMGEIVNDRLEENFNELMSYDF
TARMEDQLDHVANNEANWKGVLDEFFTNFSEQLDVASKDPDEGGMRPNPMVITSIDCPTC
SRPMGIRTATTGVFLGCSGYVLSPKERCKQTINLIPENEILNILEGDEAETNALRARHRC
KECGTAMDSYLIDNQRKLHVCGNNPACDGYEVEEGEFRIKGYDGPIVECDKCGSEMHLKM
GRFGKYMGCTSEECKNTRKILRSGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLA
ANTFPKSRETRAPLVEELVKFKDRLPEKLCYLAKAPVADPEGHKTVVRFSRKTKQQYVSS
EKNGKATGWAAFFVDGAWVTKEK
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgttatagtggagtccccggcaaaagccaaaacaatcaataaatat
ctggggaatgactacgttgtaaaatccagtgtaggtcatatccgtgatttgccgaccagt
ggagcagcgagtcaaaagagttcgaactcatcaaccgataagaataaaaagaaaaaggat
gagaagacagcgctggttaaccgaatgggagttgatccctatcacggttgggaagcggat
taccaaattttgcctggtaaggaaaaagttgtcgcagaactgaaaacgcttgctgagaaa
gccgatcatatctatctcgcaacggatcttgatcgcgaaggggaagccattgcatggcac
ctacgagaggttattggtggaggagaggctcgtttcagtcgggttgtattcaatgagatc
accaaaaatgccatcactcaggcttttgacaatcctggtgaactgaatatcgaccgtgta
aatgcacagcaggcgcgccgttttatggatcgcgtcgtgggttatatggtttcaccactg
ttgtggaagaaagtcgccagagggctgtctgccgggcgcgttcaatccgtagcggttcgc
cttatcgttgagcgggagcgtgaaatcaaggtctttgtgccagaagaatactggcaattg
cacgcggacttaatggctaaaggagacattgcgctccaaatggaagtcacccatgaaggg
ggaaaaccattcaagcccgttaacgcacagcaaacacaggctgcggtatccttgcttgaa
aaagccagatacaaagttcttgatcgtgaagaccgcccgacgtccagtaaaccgggcgcg
ccattcattacttcaacactgcaacaggctgccagtacgcggcttgggttcggtgtcaag
aaaacgatgatgatggcacagcggttatatgaagcaggacatatcacgtacatgcgtacc
gactctatcaatttgagtcaggatgcactggacatggttcgcggttatatcaatgatcac
tttggtgacaaatatttgccaaaaacagccaatatctacagcagtaaggagaattcgcag
gaggctcatgaagctatccggccttctaatgtagatgtcatggcggaagaactgaaagat
atggaagccgatgcacaaaaactgtatcagcttatctggcgccagttcgttgcctgtcag
atgatgccagcgaaatacgattccactacgctgacagttcaggcggggaattttgaactc
cgtgccaaaggtcgtacattgcgtttcgatggttggacgaaagtgatgccagcattgcgc
aagggggatgaagaccatactttaccagtggttgaagttggcactgaacttgacttgcaa
cagttgagcccaagccagcatttcacgaaaccaccggcacgtttcagtgaagcatctctg
gtcagggagttggaaaagcgtggcattggtcgcccatcaacctacgcgtcaattatttca
actattcaggatcgtggttatgtgcggggtgaaaaccgtcgattctatgcggaaaaaatg
ggtgaaatcgttaatgatcgtttagaagagaacttcaacgaattaatgagctatgacttt
accgcaagaatggaagaccagctcgatcacgtcgccaataacgaagctaactggaaaggg
gtactggacgagttttttaccaatttcagtgaacagcttgatgttgctagcaaagatcct
gatgaaggcggtatgcgtccgaatccaatggtgatcacttctattgattgtccgacgtgt
agtcgtccaatgggtattcgcacggcgacaacgggggtatttcttggctgctctggctat
gtgctatcaccgaaagagcgttgcaagcaaaccatcaatttgatcccggaaaacgaaatc
ctgaacattctggaaggggatgaggcggaaactaatgcactgcgtgcccgccatcgctgt
aaagaatgcggtacagcaatggatagctacctgattgataaccaacgtaaattacatgtt
tgtggtaataatcctgcatgtgatggttatgaagtggaagagggcgaattccgaatcaaa
ggttatgatggcccaatcgttgagtgtgataaatgtggttcagaaatgcatttaaaaatg
ggtcgtttcggtaaatacatgggatgcacaagcgaagagtgcaaaaacacccgtaagatc
ctccggagcggggaagttgccccaccgaaagaagatccagttccattgcctgaattgcca
tgtgaaaaatcggatgcctattttgttctgcgcgatggtgctgctggtgtatttcttgca
gccaacacgttccctaaatcgcgtgaaacacgagcaccgctggttgaggaacttgtcaag
ttcaaggatcgcttgccagagaagttatgctatttggctaaggctcctgttgctgaccct
gaaggtcataaaacagtagtgcgttttagccgcaagacgaagcagcaatatgtctcttcg
gagaaaaatggtaaggcgaccgggtgggccgcattttttgttgatggtgcttgggtaaca
aaagaaaagtaa
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