Xenorhabdus bovienii CS03: XBW1_2473
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Entry
XBW1_2473 CDS
T03845
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xbv
Xenorhabdus bovienii CS03
Pathway
xbv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XBW1_2473 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xbv03400
]
XBW1_2473 (mfd)
Enzymes [BR:
xbv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XBW1_2473 (mfd)
DNA repair and recombination proteins [BR:
xbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XBW1_2473 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Rabaptin
Motif
Other DBs
NCBI-ProteinID:
CDM89830
UniProt:
A0A0B6X8H2
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All DBs
Position
2347452..2350892
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AA seq
1146 aa
AA seq
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MSAKYRYQLPERRGDIRQLGHLTGAACAVECAEIIERHSGPVLLVTQNMQNALRLRDEIL
QFTHAPINMLSDWETLPYDSFSPHQEIISNRLSTLYHLPFMTKGALILPVNTLMQRVCPH
EYLKGHALVMFKGQHLSRDKLRTELEQSGYRSVEQVLEHGEFATRGALFDMFPMGSEHPY
RIDFFDDEIDSLRTFDVDSQRTLAEVETINLLPAHEFPTDQEAIELFRSQWREQFEVRRD
AEHIYQQVSKKMLPAGIEYWQPLFFEQPLPAIFDYLPENTLLITQDLVSAAERFWQDTAQ
RFESRKIDPMRPLLSPERIWLPVDKLFAELKNWPRIQVKNDALPQKAGSTNLAYQALPDL
SVATQHKTPLDKVRRFIEQFNGRIVFSVESEGRRETVQELLSRIKISPIKIKQLIDANES
GCFLMIGAAEHGFIDEENKLVLICESDMLGERVSRRRQDSRRTINTDTLIRNLAELRRGQ
PVVHLEHGVGRYQGLITLETGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGAEDSAP
LHKLGGEVWNKARQKAAEKVRDVAAELLDVYAQRAIKPGFAFKQDPEQYQLFCQSFPFDT
TPDQEQTINAVLDDMCQPIAMDRLVCGDVGFGKTEVAMRAAFMAITNNKQVAVLVPTTLL
AQQHYDNFRDRFANWPVHLEVLSRFRSAKEQQQVIDMAAEGKVDIIIGTHKLLQNDLCWK
DIGLLIVDEEHRFGVRHKERIKAIRADVDVLTLTATPIPRTLNMAMSSMRDLSIIATPPA
RRLAVKTFVREYDSLVVRESILREILRGGQVYYLYNDVENIEKAKNRLEELVPEARIVVG
HGQMRERDLERVMADFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPNPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
DQSGQMASVGFTLYMELLESAVDALKNGREPSLEDLTSSQTEIELRMPVLLPDDYIPDVN
MRLSFYKRIASAHNDAELAELKVELIDRFGLLPDPSRQLLQSASIRLTAQNLGIKRIEAH
EKGGFIEFSDNNKVDPNYLIGLLQTQPNIYRLDGPSKLKFITELTERPARLSFIQQLLEA
FIQHQI
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcaaaataccgttatcaacttcctgaacgtcgcggtgatatccgccagttgggt
catttgactggtgccgcctgtgcagtcgaatgtgccgaaatcattgaacgtcactcaggt
ccagtgctactggtgacacaaaatatgcaaaatgctttgcgattgcgtgatgaaattctg
caattcacccacgcaccaataaatatgctgtcagattgggaaacattaccttacgatagt
ttttcaccccaccaagaaatcatctcaaatcgcttatccacgctttatcacttaccgttc
atgacgaaaggtgcactaatcctgcccgtcaatacgttgatgcagcgtgtttgtccacat
gaatatctcaagggacatgccttggttatgttcaaaggtcagcacctttcacgggataaa
ctgcggacagaactggaacagtccggttatcgtagtgttgagcaagtacttgaacacggt
gaatttgctacacgcggcgccttgtttgatatgttcccgatggggagtgaacatccttac
cgtattgattttttcgatgatgaaatcgatagtctgcgtactttcgatgtagatagccag
cgaacactggctgaagtggaaacaatcaatttattgccagcccatgaattcccgactgat
caagaggcgattgaattattccgcagccaatggcgcgaacagtttgaagttcgccgcgat
gctgagcatatttaccagcaggtcagcaagaaaatgctgccggctggcattgagtactgg
caacccctgttctttgaacaacccctgcctgcgatttttgattatctacccgaaaatacc
ctgctcattacacaggatttagtcagcgcagcagagcgtttttggcaggatacagcacaa
cgctttgaaagccgaaaaattgatccaatgcggccattactatctcctgagcggatttgg
ctacctgtcgataaattattcgctgaattaaaaaactggccccgcattcaggttaaaaat
gacgcactccctcaaaaagcaggaagcaccaaccttgcttatcaggctctccctgattta
tcggttgccacacagcacaaaacacctttggataaggtgcgccgtttcatcgaacagttc
aacggcaggatcgttttctcggtagaaagtgagggacgtcgggaaaccgtacaagagctg
ttgtcacgtatcaaaattagcccaataaaaataaaacagttgatagatgccaatgagtct
ggctgtttcttgatgataggggcggcggagcatggtttcattgatgaagaaaataaactc
gtacttatctgcgaaagcgacatgctcggtgagcgtgtaagtcggcgccggcaagatagc
cgacgcaccatcaatactgatactttgatccgcaacctcgctgaactgcgtcgtggccag
cctgttgttcaccttgaacatggtgttggtcgttatcagggactgattacgctggaaaca
gggggcatcaaggcggagtatctgatcctgacctatgccggagaagacaaactgtatgtg
ccagtctcctccctgcatctcatcagccgttatgctggcggtgcagaggatagcgcccca
ctacacaaattaggtggagaagtgtggaataaagcacgtcaaaaagcggccgaaaaagta
cgtgatgtcgccgctgagttactggatgtgtatgcgcagcgtgccattaaaccgggcttt
gccttcaagcaggatcccgaacaataccaactgttttgccaaagttttccgtttgatacg
acacctgatcaagaacaaacgatcaatgcggtactggatgatatgtgccaacccattgcc
atggatcggttagtgtgtggtgatgttggctttgggaaaaccgaagtcgcgatgcgcgcc
gcttttatggccatcactaataacaaacaggtagccgttctcgtgccgacaaccctgttg
gcacagcagcattatgataatttccgagatcgctttgcaaactggcctgtgcatcttgaa
gtactgtcacgctttcgcagtgcaaaagaacaacaacaggttattgatatggctgctgaa
ggcaaagtcgatatcatcatcggtacccataaacttctacaaaatgatctgtgctggaaa
gatattggtttattgattgtcgatgaagaacaccgttttggagttcgccacaaagaacgt
atcaaagccattcgtgctgatgtcgacgtcctgactctgaccgcgactcccattcctcgc
acgcttaatatggcaatgagtagtatgcgtgatctatcgattatcgccacgccgcctgcc
cggcgtttagcggtcaaaacctttgtacgtgaatatgacagtttagtcgtccgtgaatcc
atcctgcgggagatcttgcgtggtggccaggtttattacctctataatgatgtcgaaaat
attgagaaggccaaaaatcggctggaagaattagttcctgaagccagaatcgtcgtcggc
catgggcagatgcgtgaacgtgatctggaacgggtcatggcagatttccatcaccaacgt
tttaatgtgctggtatgtaccaccattattgaaaccggaattgatatccccagtgccaat
acgattatcattgaacgcgctgatcactttggattggcccagttgcaccagttacgcgga
cgtgtcgggcgctcccatcatcaggcatatgcttatctgctgactccaaacccaaaagcc
atgactaccgatgcccaaaagcgcctggaggccatcgcatccctcgaggacttaggtgca
gggtttgcactcgccactcatgatctggaaatcaggggagctggtgaattgttaggtgaa
gaccaaagcggccagatggccagcgtcggttttacactctacatggaactgttggaaagt
gccgttgatgcgctcaaaaacggacgtgagccatcacttgaagatttaaccagcagccag
accgagattgaactacgtatgccggtacttttgcctgatgattatatccctgacgtgaat
atgcgcctgtctttctataagcgcattgccagcgcccacaatgacgctgaactggctgaa
ctgaaggttgaattgattgaccgatttggtttactgcctgatccgagtcgccagttattg
caatctgcctcaattcgtctgaccgcacagaatttgggtatcaaacgcatcgaagcgcat
gagaaaggtggctttatcgagttcagtgataacaataaagtcgacccaaattatctgatc
ggtttattgcagacacagcctaacatttatcggctggatggcccctctaaactgaaattt
attactgaattaacagagagacctgcacgtttgtctttcatccagcaattattggaagcc
ttcattcagcatcagatataa
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