Xenorhabdus bovienii CS03: XBW1_2988
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Entry
XBW1_2988 CDS
T03845
Symbol
ycfS
Name
(GenBank) putative L,D-transpeptidase YcfS
KO
K19236
L,D-transpeptidase YcfS
Organism
xbv
Xenorhabdus bovienii CS03
Pathway
xbv01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
xbv00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01503 Cationic antimicrobial peptide (CAMP) resistance
XBW1_2988 (ycfS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xbv01002
]
XBW1_2988 (ycfS)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xbv01011
]
XBW1_2988 (ycfS)
Peptidases and inhibitors [BR:
xbv01002
]
Cysteine peptidases
Family C82
XBW1_2988 (ycfS)
Peptidoglycan biosynthesis and degradation proteins [BR:
xbv01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
XBW1_2988 (ycfS)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldt_C
YkuD
LysM
Motif
Other DBs
NCBI-ProteinID:
CDM90345
UniProt:
A0A0B6X9W5
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All DBs
Position
complement(2813179..2814213)
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AA seq
344 aa
AA seq
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MKRFLTFIGMSLIGMLSLSGAINIAHAMEYPLPPTNSRLIGENAIYVVSDDGLSLEAIAA
KYQIGLLAMLEANPGVDPYLPKPGTKLIIPSQMLLPDTPRQGIIINLAEFRLYYFPKGKN
YVVVYPIGIGQLERDTPTMTTSVSQLIKNPTWTPTTNIRKDYASRGIILPTVVPAGADNP
MGDFALRLAAGRGEYLIHGTNASFGIGMRVSSGCIRLRPDDIEDLFYSVPRGTRVQVINE
PIKYTVEPTGKRYVEIHQPLSDKQTDDPQTRPIQRTEGLVKFINNRETDAVLVDQEIIRR
SGIPVLVNTGIVLSNQEEQEVSRPIEIREEATYGVNPVELPPLN
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgatttttgacttttatcggtatgtccttgatcggtatgttatcgttaagtggt
gcgatcaatatagcccatgcgatggagtatccattgccaccaactaacagtcgcctgatt
ggtgagaacgccatctatgttgtatctgatgatgggctttcgctggaagccattgccgcc
aaataccaaataggtttgctggccatgctggaggctaatcctggcgttgatccttatctg
ccgaaaccaggcaccaagctgattattccatcacagatgctgcttcccgatactcctcgt
caaggtattatcattaatctggcggaatttaggctctattatttccccaaagggaaaaat
tatgttgtcgtctatcccattgggatcggtcagcttgaacgtgatacaccgacgatgaca
acgtctgtcagccagttgattaaaaatccaacatggacaccgaccaccaatattcgtaaa
gattatgcgagtcgagggattattttgccaacagtagtacctgctggggcggataatccg
atgggggattttgccttgcgtttggctgctggccgtggagaatatttgattcatggtacg
aatgcgagttttggtattggtatgcgtgtcagttcgggctgtattcgcttgcgccccgat
gatattgaggatttgttttatagcgtgccacgaggaacccgtgttcaggtaattaatgaa
ccaatcaaatatacagtggagccaactgggaagcgttacgtggaaattcatcagccactg
tcagataaacagaccgatgaccctcagactaggccgattcagcgcactgagggattggta
aaattcatcaataatcgtgaaacagacgctgttcttgttgatcaagagattattcgacgt
tcaggaatacctgtgctggtgaatacaggtattgttttatccaatcaggaagagcaagaa
gtttcaaggccgattgagattcgtgaagaagccacttatggtgttaacccagttgaattg
ccgccattaaattag
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