Xenorhabdus bovienii CS03: XBW1_3289
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Entry
XBW1_3289 CDS
T03845
Symbol
ycbB
Name
(GenBank) putative L,D-transpeptidase YcbB
KO
K21470
L,D-transpeptidase YcbB
Organism
xbv
Xenorhabdus bovienii CS03
Brite
KEGG Orthology (KO) [BR:
xbv00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xbv01002
]
XBW1_3289 (ycbB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xbv01011
]
XBW1_3289 (ycbB)
Peptidases and inhibitors [BR:
xbv01002
]
Cysteine peptidases
Family C82
XBW1_3289 (ycbB)
Peptidoglycan biosynthesis and degradation proteins [BR:
xbv01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
XBW1_3289 (ycbB)
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Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
DUF7275
Motif
Other DBs
NCBI-ProteinID:
CDM90646
UniProt:
A0A0B6XBU3
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All DBs
Position
complement(3109816..3111534)
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AA seq
572 aa
AA seq
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MAKNTVRLLKVSFICSALAVSEGTFASQQNGLIVNDTQQFSEEQKKEDVAASPDQIIPIS
AVNSIEANRKQIQSWLPKQVKPIFIDRLATLYAVNKMKPLWQDKNTVQQFEQQLFELSLT
GVQPQFGKWLTQLHSAELSDMGRDIILSDAMLGYLHFVNNVKRKGEPWLYSKNSYKLDLP
PSDLIDKWKQHITDNHVLSYITALSPDNPMYKNMRKEMLKQLADKQQLSEFSMKGTLRPG
QNSESVVALREILIRSDTLDSSTVKPENKVYNKELVAAVKRFQALHGLSADGVIGQSTKV
WLNTTPQTRARIMALNIQRLRIIPGNIPTGILVNIPNYSLFYYLDGKEVLNSKVVVGRPS
RKTPIMSSELNNVVINPPWTVPTSMTRKDIAPRAMRDPSYFRSRGYTVFSSWSNDAKVID
PSSINWEVTTPNNFPYRIRQAPGPTNSLGRFKFNMPNSEAIYLHDTPNQASFGREMRAVS
SGCVRVNKAPELANMLLGNAGWNKDRVSNSLKTWTTAYVNIPKKIPVFLYYQTAWVDEGG
VPQYRADIYDYDMSAREQSELLPEILATRNDL
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaacacggtcaggttactgaaagtttcttttatctgtagcgcgttggcggta
tcagagggaacctttgcaagtcaacaaaatggactgatagtaaatgatacccaacaattt
tcggaggaacaaaaaaaggaagacgtagctgcttcaccggatcagattattcctatatct
gcagtgaattctattgaagcaaatcgaaaacagatacaaagttggttgccgaaacaagta
aaaccaatattcattgatcgtttggcaacgttatatgcagtcaataaaatgaaaccgcta
tggcaagataaaaatacggttcaacagtttgaacagcaattatttgaactatcattgacc
ggggttcaaccccagtttggaaagtggctaacccaacttcattccgctgaattaagtgat
atggggcgtgatattattttatcagatgcgatgttgggttatctgcattttgtcaataat
gttaagagaaaaggggagccgtggttatacagtaaaaattcttataagcttgatttaccg
ccttctgatttaattgataaatggaaacagcatattactgataatcatgtactttcttac
atcactgcgttatcaccagataaccctatgtataaaaatatgcgtaaggagatgctgaaa
caattggctgataaacagcagttgtctgaattttcaatgaaaggaacattaagaccgggg
caaaatagtgaaagtgttgtggcgttaagggaaatattaattcgttccgatactttggat
tcgtcaacggtcaaacctgaaaacaaggtttacaataaagaattagtggctgccgtaaaa
cgttttcaagctttacatgggttatcggctgatggtgttattgggcagtcgacgaaagta
tggctgaatactacgccacaaacccgcgctcgaattatggcattgaatatacagaggctg
cgtattattccaggtaatattcctacgggtattctggtcaatattcccaattactcatta
ttttattacctggatggtaaagaagtattgaattctaaagtcgttgtcgggagaccgagc
agaaaaacgcctatcatgagtagtgagctgaataatgtggtgattaatccaccgtggact
gttcctaccagtatgacacggaaggatattgcacctagagcaatgcgtgaccctagttat
tttcgtagtcgtggttataccgttttttccagttggagcaatgatgccaaggttatcgat
ccttcatcaattaactgggaagtgactacgccaaataattttccttatcgtatacggcag
gcgcctggtccaactaattcactagggcgttttaagttcaatatgccaaactcagaagcg
atttatttgcatgatacgccaaatcaggcttcatttggccgggaaatgagagcggtcagt
tcaggttgtgtacgtgttaataaggctcctgaattggctaatatgttgttggggaatgca
ggttggaataaggatcgggtaagtaattccttaaaaacatggacaacagcatatgtgaat
attccgaagaaaattccggtatttctctattatcaaacggcttgggttgatgaaggagga
gtgcctcaataccgcgcagatatttatgattatgatatgagtgccagagagcaatctgag
cttttacccgagatcctggcaactcgaaatgatttataa
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