Xenorhabdus bovienii CS03: XBW1_4362
Help
Entry
XBW1_4362 CDS
T03845
Symbol
rtcB
Name
(GenBank) Protein rtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xbv
Xenorhabdus bovienii CS03
Brite
KEGG Orthology (KO) [BR:
xbv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xbv03016
]
XBW1_4362 (rtcB)
Enzymes [BR:
xbv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
XBW1_4362 (rtcB)
Transfer RNA biogenesis [BR:
xbv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
XBW1_4362 (rtcB)
Prokaryotic type
tRNA splicing ligases
XBW1_4362 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
GIL1_IRKI_C
Motif
Other DBs
NCBI-ProteinID:
CDM91711
UniProt:
A0A0B6XEX0
LinkDB
All DBs
Position
complement(4234942..4236183)
Genome browser
AA seq
413 aa
AA seq
DB search
MTATEMKTNAYNLLTQENGTQIKMWTHGVPVDPKAITQLQNTAKMPFVFKHLAVMPDVHV
GKGSTIGSVIPTRGAIIPAAVGVDIGCGMIAVRTSLVASDLPDSLLNIRHAIEAAVPHGR
TVNRGGRDKGSWHRAPEIVDQHWATLADGFKCITDKYPKLLNTNNHQHLGTLGTGNHFIE
LCLDETDRVWVMLHSGSRGVGNAIGNLFISLAQKDMQQHIANLPDRDLAYFEEGSRYFDD
YMEAVGWAQDYARQNREVMMHRVLEALSREIPKPFTTQEEAVNCHHNYVQREQHYGEEVL
VTRKGAVSARRGQMGIIPGSMGAKSYIVRGLGNEESFCSCSHGAGRVMSRTEAKKRFTVS
DQKRATAHVECRKDSDVIDEIPMAYKDIDAVMEAQSSLVEIVHTLRQVVCVKG
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaactgaaatgaaaaccaacgcttataacttattgacgcaagaaaatggcact
caaataaaaatgtggactcacggagtcccggttgatccgaaagccattacccaattacag
aacacggccaagatgccttttgtattcaaacatctggcggtaatgccggatgtccatgtc
ggtaaaggatcgactatcggtagcgtgatcccaacacgcggagccatcatacccgcagcg
gttggcgtggatatcggttgtggaatgattgccgtgcgtacttccctggtggcatcagat
ttgccggatagtttgctgaatatccgtcatgccatcgaagcggctgtaccacatgggcgt
actgtgaaccgtggtggtcgtgataagggttcttggcatcgtgcgccggaaattgtggat
cagcattgggcgacgttggcggatggtttcaaatgtattaccgataaatacccaaaatta
ctgaacaccaataaccatcagcatttgggaacactgggaacgggtaaccatttcatcgaa
ttgtgccttgatgaaacagatcgtgtctgggtgatgctgcatagcggttcccgtggggtg
ggtaacgctatcggtaacttatttatttcattggcgcagaaagatatgcagcagcatatt
gcgaacctgccagaccgtgatttagcttatttcgaagaaggcagccgttattttgatgat
tacatggaagcggttggttgggcacaggattacgctcgccaaaacagggaagtgatgatg
caccgcgtgcttgaagccttgtcacgcgagatcccaaaaccgtttacaacacaggaggaa
gccgtgaactgccaccataactacgtccagcgtgaacagcattatggtgaagaggttttg
gtgacacgtaaaggggcggtatctgcccgtagaggccagatggggatcattccgggttca
atgggcgcgaaaagctatatcgtccgtggcctcggaaacgaagaaagtttctgttcatgc
agccacggagcggggcgtgtaatgagccgtactgaggcgaaaaaacgtttcaccgtaagc
gatcaaaagcgcgcaactgcacatgtggaatgccgtaaagacagcgatgtcattgatgag
atcccaatggcgtacaaagatattgatgcagtgatggaagctcagtcatcgctggtggaa
attgtgcataccctgcgtcaggtggtttgcgtaaaaggataa
DBGET
integrated database retrieval system
