Xenorhabdus bovienii CS03: XBW1_4408
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Entry
XBW1_4408 CDS
T03845
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xbv
Xenorhabdus bovienii CS03
Pathway
xbv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xbv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XBW1_4408 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbv03019
]
XBW1_4408 (deaD)
03009 Ribosome biogenesis [BR:
xbv03009
]
XBW1_4408 (deaD)
Enzymes [BR:
xbv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XBW1_4408 (deaD)
Messenger RNA biogenesis [BR:
xbv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XBW1_4408 (deaD)
Ribosome biogenesis [BR:
xbv03009
]
Prokaryotic type
rRNA helicases
XBW1_4408 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrD-helicase
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CDM91757
UniProt:
A0A0B6XD68
LinkDB
All DBs
Position
complement(4277324..4279294)
Genome browser
AA seq
656 aa
AA seq
DB search
MTTETEISFADLGLSAPILAALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAA
FTLPLLHNIDAELKAPQILVLAPTRELAVQVAEACSEFSKQMRSVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPA
EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVHGVRKNEALVRF
LETEDFDATIIFVRTKNATLEVAETLERHGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKLTIPEVELPNAELLSQRRLEKFAAKVQQQLESSDLDQYRALLSKLSTNDELDME
TLAASLLKMAQGERPLILPPDPVRRPRREFNDRDDRRRDGFVSRERNDRGDRNDRGDKSD
RPRRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELP
KGMPGDLLSHFTRTRILNKPLNMQLMGDAQPFERRGGGSGRTGNGSNASNGSNSGNGSTG
GNGSNSGNAPRRDREGFGNGGRRFSTERRGDRANSRGRSGDESNSAPRRRQNSGNA
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgagactgaaatctcttttgctgatttaggtttatcagcacctattcttgct
gcactgggagacatgggctatgagaagccttcccctatccaacaacaatgtattcctcac
ctgttaaacggtcgtgatgtgctgggtatggcacagaccggtagtggtaaaactgcagca
tttaccttgcctttgctgcacaacattgatgctgagcttaaagctccacagatccttgtg
ttagcgccaacccgtgaactggcggtacaggttgctgaagcatgttcagagttctccaag
caaatgcgtagtgtaaacgttgttgcactctacggtggacagcgttacgacgtacaattg
cgtgcactgcgtcaagggccacaggttgtggtaggcacgccgggtcgtctgctggatcac
ctgaagcgtggtactttggatctgtccaacctgaaaggtctggtactggatgaagccgac
gaaatgctgcgcatgggctttatcgaagatgttgagaacatcatgagccagatccctgct
gagcaccagactgccttgttctcagcaactatgcctgaagcgattcgtcgtattactcgt
cgtttcatgaaggatccacaggaagttcgtattcagagcagtgttactactcgtccagat
atcagccagagctactggtctgtacatggcgtgcgtaaaaacgaagcactggtacgtttc
cttgaaacagaagattttgacgctacgattattttcgtgcgtaccaaaaatgcaacgctg
gaagtagcagaaaccctggaacgtcatggttataactctgcggcattgaatggtgacatg
aatcaggcgctgcgtgagcagacactggaacgtttgaaagatggccgtttggatatcctg
attgcgacagatgtagcggctcgtggtctggatgttgagcgcatcagtctggtcgtgaac
tacgatatcccaatggatgcggaatcatatgtacaccgaatcggccgtactggtcgtgct
ggtcgtgctggccgtgctctgctgtttgttgaaaaccgcgagcgtcgtctgctgcgtaac
gttgaacgtaccatgaaactgaccatcccggaagttgaactgccgaatgcagaacttctg
agccagcgtcgtctggagaaatttgcggctaaggttcagcagcaactggaaagcagcgat
ctggatcagtatcgtgcactgttgtctaaactgagcactaacgatgagctggatatggaa
acgctggcagcgtcattgctgaaaatggcacagggtgagcgcccactgattctgccacca
gacccagttcgtcgtcctcgtcgtgaattcaatgatcgtgatgaccgtcgccgtgatggt
ttcgtcagtcgtgaaagaaatgacagaggtgacagaaacgaccgtggcgacaaaagtgat
cgtccgcgccgcgaacgccgtgacgtaggagacatggaactgtaccgtattgaagtgggt
cgtgatgatggtgttgaagtgcgtcacattgttggtgcaatcgccaacgaaggtgatatc
agcagccgttatatcggtaacatcaagctgttcgctactcactccaccattgagctgcca
aaaggaatgccgggggatttattgtctcacttcacacgtacccgcatcctgaacaagcca
ctgaatatgcagttgatgggtgatgcacaaccgtttgaacgtcgtggcggtggtagtggt
cgtactggtaacggtagcaacgctagcaacggtagcaatagcggtaatggtagcactggc
ggtaacggtagcaacagcggtaatgctccacgtcgtgatcgtgaaggctttggtaatggt
ggccgtcgttttagcactgaacgccgtggcgatcgcgctaattcccgtggccgcagtggt
gatgagagcaatagcgcaccacgtcgtcgtcaaaacagcggcaacgcataa
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