Xanthomonas campestris pv. campestris B100: xcc-b100_1206
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Entry
xcc-b100_1206 CDS
T00759
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xca
Xanthomonas campestris pv. campestris B100
Brite
KEGG Orthology (KO) [BR:
xca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xca03019
]
xcc-b100_1206
Enzymes [BR:
xca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
xcc-b100_1206
Messenger RNA biogenesis [BR:
xca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
xcc-b100_1206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
SRP54
NACHT
AAA_23
Cas3-like_C_2
T2SSE
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
CAP50554
UniProt:
B0RQ19
LinkDB
All DBs
Position
1381478..1385593
Genome browser
AA seq
1371 aa
AA seq
DB search
MSAIDTDLATTLRERRGAVDAAMSRDRGRLLGLWSRWQGKPGNPQLRQAFEQALAASQAQ
RQARAAQQPAITLDTQLPIAREADRIIALIRDHPVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRIAARAVAARVAEELNTPLGTTVGFQVRFTDRVGEDSRIKFMTDGILLA
EIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFSRH
FDDAPVINVEGRTFPVEVRYRPLEGESGDGDTGDGGRDGERTVNDAIVAAIDEITRIDPR
GDVLMFLPGEREIRDAHQSLERRKYRETEVVPLYARLSAADQDRVFNPGPRRRLVLATNV
AETSLTVPRIRYVVDPGYARVKRYSPRQKLDRLHIEPISQASANQRMGRCGRIAEGICYR
LYAEADFAARPAFTDPEIRRASLSGVILRMLQFGLGRIEEFPFLEAPDERAVADGWQQLL
ELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAASLGIQDPRERPP
EAREAADNAHALFADARSEFVGILRLWDAYRQVHEDLTQSKLRDWCGRHFLGFLRMREWR
ELHRQLRLLCEELGWSEEPAGAMLAPLLAGASAPVREDGQAHRATRGQLHRAARLAREGK
PDPAAPPAQAKAAAAKSSPADATDAAVRTSERERAAAYQALHRALLAGLPTQIGHRTEKG
DFLAARQRRFVPFPGSALARKPPPWILAATLLDTQKVWGMTNAAIEPDWAIAELPHLLAR
KHFDPRWSRAQGQVVASEQISLFGLVLAPKKPVHFGKIDPATSHDLFVRQGLVPGEINTR
AAFVADNLKVLEQAREEEAKLRRAGIVADEDWQARWYLDRIPAELHSASGLDAWWKTLPA
DKRRSLHWSLNDLLPGEGSEADRFPKYFALGDARLPLQYRFEPGAIDDGVTLEVPLHLLN
ALDPSRLSWLAPGFVADKASALIRSLPKAQRRNYVPAPDYGRAFYEAFSTPSADDMRGEL
ARFLSKATGAPVAALDFDEEALDTHLLMNLRLRAEDGKVLAESRDLEGLRARFGERAGQA
FAARAGRALAAEGLRDFPATPIPEQVAGEAGVPAYPALVDQGEDAALRIFADRNEALRAH
PRGVRRLLEIALADKIKQARKQLPVSPKTGLLYAAIESQERLRGDLVDAALNAVLAEGLG
AIRDPAAFAQRREDAVKRLFGEAMARLTLAESILGAVAELKPLLEAPLMGWARGNLDDME
QQLRALVHAGFLRDTPADALANYPRYLKAMILRTERAKRDPARDQARMLELKPFVDALND
AAARGLQQHPDWQALRWDLEELRVSVFAQELGAKSGVSAKKLSQRVAALRG
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctatcgacactgacctcgccaccacgttgcgtgagcgccgcggcgccgtggat
gccgccatgagccgcgatcgtggccgtttgctgggcctatggtcgcgctggcaaggcaag
cccggcaacccgcagctgcgccaggccttcgaacaggcgctggccgcctcgcaggcgcaa
cggcaggcgcgtgccgcgcagcagccggcgatcacgctggatacgcaactgccgatcgcg
cgcgaagccgatcgcatcatcgcgctcatccgcgaccatccggtggtggtgattgccggt
gagaccggttcgggcaagaccacccagttgcccaagctgtgcctggcagccgggcggggt
gcggccggcatgatcggctgcacgcagccgcggcgtatcgctgcgcgcgcggtggccgcg
cgcgtggctgaagaactcaacaccccgttgggcaccacggtggggttccaggtgcgcttc
accgatcgcgtgggtgaggactcgcgcatcaagttcatgaccgacggcattttgctggcg
gagatcgccagcgaccggtggttgtccgcctacgacaccatcatcgtggacgaagcgcac
gagcgcagcctcaacatcgacttcctgctgggttatctcaagcagctgctgcgcaagcgt
cccgacctcaagttgatcgtcacttcggcgaccatcgacaccgagcggttctcgcggcat
ttcgatgatgcgccggtgatcaacgtggaaggccgcaccttcccggtggaggtgcgctac
cgccccctcgaaggcgagtctggcgacggcgacaccggcgatggagggcgcgatggcgaa
cgcaccgtcaacgacgccatcgtggcggcgatcgacgagatcacccgcatcgacccgcgt
ggcgatgtgctgatgttcctgccgggcgagcgtgagattcgcgatgcgcaccagtcgctg
gagcggcgcaaataccgtgagaccgaagtggtgccgctgtacgcgcggctgtcggcggcc
gaccaggaccgcgtgttcaacccgggcccgcgccggcgcctggtgctggcgaccaacgtg
gccgaaacctcgctgacggtgccgcgcatccgctacgtggtggatccgggctatgcgcgc
gtcaagcgctacagcccgcggcagaagctggaccggctgcatatcgagccgatttcgcag
gccagcgccaaccagcgcatgggccgctgcgggcgtatcgccgagggcatctgttaccgg
ctgtacgcggaggcggatttcgccgcgcgcccggccttcaccgacccggagatccggcgc
gcgtcgttgtcgggcgtgatcctgcgcatgctgcagtttgggctggggcgcatcgaggag
tttccgttcctggaagcgccggacgaacgcgccgtggccgatggctggcagcagctgctg
gagctcggtgcgatcgatgcggagcggcggctgacggcgatcggccggcagatggcgcgc
ctgccggtggacgtcaaactggcgcgcatgctggtggccgcgcaacagcacggttgcctg
cgcgagatgatcatcatcgccgcgtcactgggtatccaggatccgcgcgagcgcccgccg
gaagcgcgcgaggccgccgataacgcgcatgcgctgtttgccgatgcgcgctcggagttc
gtcggcatcctgcgcctgtgggacgcctaccggcaggtacacgaagacctcacccagtcc
aagttgcgcgattggtgcggacggcattttctcggcttcctgcgcatgcgcgagtggcgt
gaactgcaccgccagttgcgcttgctgtgcgaagaactgggctggagcgaagagccggcc
ggcgcgatgctggcgccactgctggccggtgccagcgcgccggtgcgcgaggacgggcag
gcgcaccgtgccacccgtgggcagctgcaccgtgccgcgcggctggcgcgcgaaggcaag
ccggatccggcggcgccacccgcgcaggcgaaggccgcggctgcaaagagctcacctgcc
gatgccaccgacgcggcggtgcgcacgtccgagcgcgaacgtgctgccgcctaccaggcc
ttgcaccgcgcactgctggcgggcctgccgacgcagattggccaccgcactgaaaaaggc
gatttcctggctgcgcggcaacgccggttcgtgccgtttccgggctccgcgttggcacgc
aagccgccaccgtggattcttgcggcgaccttgctcgacacccagaaagtgtggggcatg
accaatgcggcgatcgagccggactgggccattgccgagttgccgcacctgctggcacgc
aagcatttcgacccgcgctggtcgcgtgcacaagggcaggtggtggcctccgagcagatc
agtctgttcggcctggtgctggcgcccaagaagccggtgcacttcggcaagatcgacccc
gccacctcgcacgacctgttcgtgcggcagggcctggtgccgggcgaaatcaacacgcgt
gcggcgtttgtcgccgataacctcaaggtgctggaacaggcgcgcgaagaggaagccaag
ctgcgccgcgccggcatcgtggccgacgaggactggcaggcgcgctggtatctggatcgc
attccggccgaactgcattcggccagtggcctggatgcgtggtggaagaccttgcctgcc
gacaagcgccgcagcctgcattggtcgttgaacgatctgctgcccggcgaaggcagcgag
gcggaccggttcccgaagtatttcgcgctgggcgatgcgcggttgccgttgcagtaccgc
ttcgagccgggggctatcgacgatggcgtgacgctcgaggtgccgttgcatttgctcaat
gcactggatccgtcgcggttgtcgtggctggcacccgggtttgtggccgacaaggcgtcg
gcactgatccgcagcctgcccaaggcgcagcgccgcaattacgtgccggcgccggattac
ggccgcgcgttctacgaggccttcagcacgccatcggcggacgatatgcgcggcgagctg
gcgcgctttttgagcaaggccaccggtgcgccggtggcggcgctggatttcgacgaagaa
gcgctggacacacatctgctgatgaacctgcggctgcgcgccgaggacggcaaggtgctg
gccgagtcgcgcgatctggagggattacgtgcgcgctttggcgagcgtgccgggcaggcc
tttgccgcgcgtgccggacgcgcgctggcagcggaagggctgcgcgatttcccggccacg
ccgatccccgaacaggtggccggcgaagcgggcgtgcctgcgtatccggcgttagtggat
cagggcgaggatgccgcgctacggatctttgccgaccgcaacgaagcgctgcgtgcgcat
ccgcgtggtgtgcgccggctgctggaaattgccttggccgacaagatcaagcaggcgcgc
aagcagctgccggtgtcgcccaagacggggctgttgtatgcagcgatcgaatcgcaggag
cgcctgcgcggcgatctggtggatgcggcgctcaatgcggtgctggccgaggggctgggc
gcgatccgcgaccctgccgcgttcgcgcagcgccgcgaggatgcggtcaagcggctgttt
ggcgaagcgatggcacggttgacgctggcagagagcattctcggcgcagtggccgaactc
aagcctttactggaagcgccgttgatgggctgggcgcgcggcaatctggatgacatggaa
cagcaattgcgcgcgctggtgcatgccgggttcctgcgcgacacgccggccgatgcgctg
gccaattatccgcgctacctcaaggcgatgatcctgcgcaccgaacgcgccaagcgcgac
cccgctcgcgaccaggcacgcatgcttgagctcaagccgttcgtggatgcactcaacgac
gccgcggcgcgtgggctgcaacagcatccggattggcaggcgctgcgctgggatctggaa
gaactgcgggtgtcggtattcgcgcaggagctgggcgccaaatccggcgtttcggcgaag
aagttgtcgcaacgcgtggcggccttgcgagggtaa
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integrated database retrieval system
