Xanthomonas campestris pv. campestris B100: xcc-b100_1519
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Entry
xcc-b100_1519 CDS
T00759
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xca
Xanthomonas campestris pv. campestris B100
Pathway
xca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
xcc-b100_1519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xca03019
]
xcc-b100_1519
03009 Ribosome biogenesis [BR:
xca03009
]
xcc-b100_1519
Enzymes [BR:
xca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
xcc-b100_1519
Messenger RNA biogenesis [BR:
xca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
xcc-b100_1519
Ribosome biogenesis [BR:
xca03009
]
Prokaryotic type
rRNA helicases
xcc-b100_1519
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
AAA_19
P-loop_SecA
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAP50869
UniProt:
B0RQY4
LinkDB
All DBs
Position
1744575..1746503
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AA seq
642 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RAIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVP
AIDIAAAMAKLLQGDAPFLLTPPVRGAREDFAPRERNDRADRGERPRFEPKFERGPRAPD
GERGARPPRPDRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIVGA
IANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAA
AAASKPKFPRGPRPAGRPNRPMDRAGAPHRKGPPKPRGPRSE
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcagatgctgtg
atgaaggcggttgccgccgtcggctacgagaccccttcgccgatccaggccgccaccatc
ccggcgctgctggccggtcgcgatgtgcttggccaggcccagaccggtaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaatgccgacctgaaccaggtcaagccgcaggcg
ctggtgctggcgccgacgcgcgaactggccatccaggtggctgaagccttccagaaatat
gccgaagccatccccggtttccgcgtgctgccggtgtacggcggccagccgtatgcccag
cagctcagcgcgctcaagcgcggcgtgcacgtggtggtgggcaccccgggccgggtgatc
gatcacctggaccgcggcaccctggacctgtcgcagctgaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgatgacgtcgaagcggtactgaagaagctg
ccggaaaagcgccaggtggcgttgttctccgcgaccatgccgccggcgatccgccgcatt
gcgcagacctatctcaaggacccggccgaagtcaccatcgcggccaagaccaccacctcg
gccaatatccgccagcgctactggtgggtgagcggcctgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggccgcc
accgaagagctggcgcagaagctgcaggcgcgcggtctggccgcggccgccatcaatggc
gacatgcagcaggccgcccgtgagaagaccattgcccagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgcggcctggatgtggaacgcgtcagccacgtg
ctgaactatgacattccgtacgacaccgaaagctacgtgcaccgcatcggccgtaccggc
cgtgccggccgcaacggcgacgcgatcctgttcgtcaccccgcgcgagaagggcatgctg
cgcgcgatcgagcgcgccacccgtcagccgatcgaagagatgcagctgccgagcgtggac
gcggtcaacgacacccgcgtggcgcgtttcatgacccgcatcaccgagaccctggccggc
ggtcagatcgagatgtatcgcgatctgctgcagcgctatgagagcgagaacaacgtgccg
gcgatcgacatcgccgcggcgatggccaagctgctgcagggcgatgccccgttcctgctg
actccgccggtgcgtggcgcgcgcgaagacttcgcaccgcgtgagcgcaacgaccgcgcc
gaccgtggcgagcgcccgcgcttcgagcccaagttcgagcgtggcccgcgtgcgcccgac
ggcgagcgtggtgcacgtccgccgcgtccggaccgcccggcctatggtgaagacgccggc
gccgagcgtccgcgccgcgagccgagcgcaccgcgcggtgagccggagttcggcatggag
agctaccgcatcgaagtgggccacacccatggcgtgaagccggccaacattgtcggtgcc
atcgccaacgaagccggcctggaaagccgctacatcggccgcatcgacatccaggatgat
tactcgatcctggacctgccggccgacatgccgcgcgaactgctgacgcacctgaagaag
gtctgggtgtcgggccagcagctcaacatgcgcaagctggaagagggcgaggcggccgct
gcggcggcgtccaagcccaagttcccgcggggccccaggccggcgggccggcccaaccgg
ccgatggaccgcgccggcgcgccgcaccgcaagggcccgcccaagccgcgtggcccgcgc
agcgagtaa
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