Xanthomonas campestris pv. campestris 8004: XC_0034
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Entry
XC_0034 CDS
T00247
Name
(GenBank) conserved hypothetical protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xcb03032
]
XC_0034
03400 DNA repair and recombination proteins [BR:
xcb03400
]
XC_0034
Enzymes [BR:
xcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
XC_0034
DNA replication proteins [BR:
xcb03032
]
Prokaryotic type
DNA Topoisomerases
XC_0034
DNA repair and recombination proteins [BR:
xcb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XC_0034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF7508
Motif
Other DBs
NCBI-ProteinID:
AAY47128
UniProt:
A0A0H2X274
LinkDB
All DBs
Position
44887..46071
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AA seq
394 aa
AA seq
DB search
MAATAAVTTAAAVAQAKATARAAGLIYVNDQQPGISRRKAGKNFSYRDADGQRVTDADTL
QRIRALAIPPAYTEVWICAKPNGHLQATGRDARRRKQYRYHADWAQVRGEGKFERVIAFG
EALPKLRRRLRRDLLLPGFPREKVLAIVVALLADTLVRVGNAEYSRSNRSYGLTTLRNRH
MEFLKGGRARLKFRGKSGQEHEIEVDDKHLVKLIRECQQLPGQSLFQYKDDDGQLQPVDS
GEVNDYLREAMGEDFTAKDFRTWGGTLAALQRLARLPVPERSSERALKQVQNDVIREVAD
ALGNTPSVCRKAYIDPCVFEGWRAGELQTLATGVRGERQWEAATLRFLSASRAKVRKVVK
AAKSSATSVKPAKRASKCAIKRPTTTKAGARKAA
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
gtggccgccaccgccgccgtcaccaccgctgctgcggtggcccaggccaaggccaccgcg
cgtgcggccggcctgatctatgtcaacgaccagcagcccgggatcagccgccgcaaggct
ggcaaaaacttcagctaccgggacgcggacgggcagcgggtgaccgatgccgacaccttg
cagcggatccgcgcgctggccattccgccggcgtataccgaggtgtggatctgcgccaag
cccaacggccatctgcaggccaccggccgcgatgcacgccggcgcaagcagtaccgctac
cacgccgattgggcgcaggtgcggggcgaaggcaagttcgagcgtgtgatcgccttcggc
gaagcactgccgaagttgcgccgccggctgcgccgcgatctgctgctgccgggcttcccg
cgtgaaaaagtactggccatcgtggtggcgttgctggctgacacgctggtgcgtgtgggc
aatgccgaatactcgcgcagcaatcgctcctacgggctgaccacgctgcgcaaccggcac
atggaatttctgaaaggcggccgcgcgcggctcaagttccgcggtaagagtggccaagaa
catgagatcgaagtcgacgacaagcacctggtcaaactgatccgcgaatgccagcagctg
ccggggcagtcgctgtttcagtacaaggatgatgacggccagctgcagccggtggattcg
ggcgaggtcaacgactatctgcgcgaggcgatgggcgaggacttcaccgcaaaggacttc
cgcacctggggcggcacgctggcggcgttgcagcgcctggcgcggctgcccgtgcccgag
cgcagcagcgagcgggcactcaagcaggtgcagaacgatgtcattcgcgaggtggccgat
gcactgggcaacacgccgtcggtctgccgcaaagcctacatcgacccttgcgtgttcgaa
ggctggcgcgctggcgagttgcagaccctggccaccggtgtgcgcggcgaacggcaatgg
gaagcggccacgctgcggttcttgagcgcctcgcgcgccaaggtgcgcaaggtggtgaaa
gcggcgaagtcctcggccacatcggtcaagccagccaagcgtgcgagcaagtgtgccatc
aagcggccgaccaccacgaaggctggagcacgcaaggcagcgtga
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