Xanthomonas campestris pv. campestris 8004: XC_0556
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Entry
XC_0556 CDS
T00247
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
XC_0556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcb03021
]
XC_0556
Transcription machinery [BR:
xcb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XC_0556
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
HTH_24
HTH_10
HTH_28
Sigma70_ECF
HTH_11
HTH_29
PhyR_sigma-like
HTH_IclR
HTH_31
Fe_dep_repress
HTH_Tnp_ISL3
Rv2175c_wHTH
HTH_Tnp_4
HTH_38
HTH_Mga
HTH_AsnC-type
HTH_7
MarR_2
DUF722
GerE
Motif
Other DBs
NCBI-ProteinID:
AAY47637
LinkDB
All DBs
Position
665245..665754
Genome browser
AA seq
169 aa
AA seq
DB search
MSATQVALQQQVERLYTDHHGWLQGWLRRKLGDGCVAADLAQDTFISVIDAGAADQIREP
RPFLATIARRLMAHRQRRKLLEASYLEMLATLPEELAPSPELHLLALEAVQQLDQALDGL
PPKVKEAFLLAHLHELSYAQIAQRLGVSSSSVKQYLTRANRQCLFAVSA
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggccacgcaagtcgcgcttcagcagcaggtggagcgcctgtacaccgaccaccac
ggctggctacagggctggttgcggcgcaagctgggcgacgggtgcgtggcggccgacctg
gcccaggacaccttcatcagcgtgatcgatgccggcgcggccgaccagatccgcgagccg
cggccgttcctggccaccatcgcgcggcggctgatggcgcaccgccagcggcgcaagctg
ctggaggccagctacctggagatgctggccacgttgccggaagagctggcgccttcgccg
gagctgcacctgctggcgctggaggcggtgcagcagctggaccaggcgctggacggcctg
ccgccgaaagtgaaggaggccttcctgctggcgcacctgcacgagctcagctacgcgcag
atcgcgcagcgcctgggggtgtccagcagctcggtcaagcaatacctcacgcgcgccaac
cggcagtgcctgttcgctgtgtcggcctga
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integrated database retrieval system
