Xanthomonas campestris pv. campestris 8004: XC_1609
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Entry
XC_1609 CDS
T00247
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XC_1609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcb03019
]
XC_1609
03016 Transfer RNA biogenesis [BR:
xcb03016
]
XC_1609
Enzymes [BR:
xcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
XC_1609
Messenger RNA biogenesis [BR:
xcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XC_1609
Transfer RNA biogenesis [BR:
xcb03016
]
Prokaryotic type
tRNA degradation factors
XC_1609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
S1_2
DUF7680
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AAY48675
UniProt:
Q4UW98
LinkDB
All DBs
Position
1930836..1932950
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AA seq
704 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAG
TANAVLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKNTA
LISALKEAVGTQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGE
LEYHTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTA
RDGQVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSK
ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVPASAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcaccctggagacgggc
gaagtcgctcgccaggcgagcggtgccgtcatcgtcaagatggacgacaccgtactgctg
gtcaccgccgtcgccgccaagaccgcgcgcgaagggcaggacttcttccccctgacggtt
gactatcaggagaagttctatgccggcggccgcatcccgggcggcttcttcaagcgcgaa
ggacgtgcgaccgagaaggaaacgttgatctcgcgcctgatcgatcgtccgatccgtccg
ctgttcccggaggactacaagaacgaagtgcagatcatcgccacggtgatgtcgatgaac
ccggacatcgacggcgatatcgccgcgctgatcggtgcgtcggctgcgctgtcgttggcc
ggtacccccttcaacggcccgatcggcgccgccaaggtgggctacaagaacggcgaatac
attctcaacccgaccatcaccgagctgaaggattcgcagcttgagctggttgtggccggt
acggcgaacgccgtgctgatggtggagtcggaagcggcgctgctgtcggaagaagtgatg
ctgggcgcggtcacctttggtcatcgcgagatgcagaaggtcatcaacatcatcaacgaa
ctgaccgtcgaagccggcaccaagcccagcacctgggtggccccggccaagaacaccgcg
ctgatcagcgcgttgaaggaagcggttggcacccagctggcgggtgccttccaggtgcgc
gacaagctgcagcgtcgcgacgccatttcggcgatcaagaaggacgtgctcgagtcgctg
gcaggccgcgtggcttccgaaggctggagctcggccgagctgtcgaaggaattcggcgag
ctggaataccacaccatgcgtgactcggtgctggagaccaaggtgcgtatcgacggccgt
gcactggacaccgtgcgcccgatctcggtacaggccggcgtgctgccgcggacccatggc
tcggcgctgttcacccgcggcgagacgcaggcgatcgtggtcaccacgctgggcaccgcc
cgcgacggccaggtgatcgacgcggtcgctggcgagtacaaggaaaacttcctgttccat
tacaacttccctccgtattcggtgggcgagtgcggccgctttggcgcgccgaagcgtcgc
gagatcggccacggccgtctggccaagcgcggcgtgttggccgtgatgccgagcctggaa
gaattcccgtacaccatccgcgttgtctcggaaatcaccgagtccaacggttcctcgtcg
atggcttcggtgtgcggctcctcgctcgcactgatggacgccggcgtgccggtcaaggca
ccggtggcgggtatcgccatgggcctggtgaaggaagacgaccgcttcgtggtgctgtcc
gacatcctgggggacgaagatcacctgggcgacatggacttcaaggtggccggtactgct
gaaggcgtgtccgcgctgcagatggacatcaagatcgaaggcattaccgaagagatcatg
aagcaggcactgcagcaggccaaggctggccgtctgcacatcctgggcgagatgtccaag
gcgctgaccaccccgcgtcaggagctgagcgactacgcgccgcgcctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggctcgaccatccaggcgatc
accaaggaaaccgggacgcagatcgatatccaggacgacggcacgatcatcattgcttcg
gtcaacgcgattgccgcgcaagctgcgaagtcgcgcatcgagcagatcacctcggacgtg
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtg
accatcctgccgggcaaggatggcctggtacacgtgtcgcagatttccagcgagcgcgtg
gagaaggtcggcgacaagttgaaggaaggcgatctggtccgcgtcaaggtgctggaagtg
gacaagcagggccgcatccgtctgtcgatcaaggcagtggaagaaggcgaaggcgtgcct
gcatcggctgagtaa
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