Xanthomonas campestris pv. campestris 8004: XC_2343
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Entry
XC_2343 CDS
T00247
Name
(GenBank) putative single stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03410
Base excision repair
xcb03430
Mismatch repair
xcb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XC_2343
03430 Mismatch repair
XC_2343
03440 Homologous recombination
XC_2343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcb03400
]
XC_2343
DNA repair and recombination proteins [BR:
xcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
XC_2343
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
XC_2343
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XC_2343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AAY49396
UniProt:
A0A0H2X812
LinkDB
All DBs
Position
complement(2832536..2834284)
Genome browser
AA seq
582 aa
AA seq
DB search
MTSSPTIVRRPPGQGGTWPDAMLPLLRRIYAARGVVDVHGAHPRLGQLLSPELLHNSRVA
AELLADAIAAQRRILVVGDFDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPA
LVDELAALQPDLLVTVDHGIACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLV
QDSFPSKTLAGVGVIFYVLLALRGVLRARGAFAERAEPDLSVLLDLVAVGTVADLVPLDT
NNRALVSAGLRRLRDGKGCIGLRALIDASGRDAARLSASDIGFALAPRLNAAGRLEDMAL
GIELLLCEDWSRAREIAGLLEEINAERRAVQQLMTDDAEQAVTKVMLAADGALPMAACLF
DPEWHPGVIGLVASKLKDRLHRPVIALAPAEPGSDQLRGSARSIPGLHIRDVLAAVDARH
PGLIQKFGGHAMAAGLSLEHRALAAFEQAFQTQVQAMVDASLLQAELHSDGELAAHELDH
LHAEALRAAGPWGQGFPEPLFDGQFEVLQWRLLKERHLKLTLRCAGRAGRAEPLNAIHFN
GWRGSEPARTVRIAYRLVGDDYRGGTAVQLIVEHCEPAASAG
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgacctccagccccacgattgtgcgacgcccgccggggcagggcggcacctggcccgac
gcaatgctgccgttgttgcggcggatctacgccgcgcgcggcgtggtcgatgtgcacggc
gcgcacccgcggctcggccagctgttgtcgccggagttgttgcacaacagccgcgtcgcg
gccgaactgttggccgatgcgatcgccgcccaacggcgcatcctggtggtaggcgacttc
gattgcgatggcgctaccgcgtgcgcagtcggcgtgcgcggtctgcgcatgctgggtgcg
ctggatgtgcaccatgcggtgcccaaccgcatggtgcatggctatggtctgtcaccggcg
ctggtggacgaactggctgcactgcagccggatctgctggtcaccgtcgatcacggcatc
gcctgccatgccggtgttgcggcggccaaggcacgcggctggaccgtgctggtcacagat
caccatttgcccggcgaggtcttgccgccggccgatgcaatcgtggaccccaacctggtg
caggacagtttcccgagcaagacgttggccggggtcggggtgatcttctacgtgctgctg
gccttgcgtggcgtgttgcgcgcacgcggggcgtttgccgagcgggcagaaccggatctg
tccgtgctgctggatctggtggcggtgggcacggtggccgatctggtgccgctggacacc
aataaccgcgcactggtgtcggcgggcctgcgccgcctgcgtgacggcaaaggctgtatc
ggcctgcgtgcgttgatcgacgccagtggccgcgatgcggcgcggctgagtgccagcgat
atcgggtttgcgttggcgccacgtctcaacgccgccggccggctcgaagacatggcactg
ggcatcgaactgttgctgtgcgaggactggagccgggcgcgcgagatcgccggcctgctg
gaagaaatcaacgccgagcgtcgtgcggtccagcagttgatgaccgacgatgccgagcag
gccgtcaccaaggtgatgctggctgccgatggcgcgctgccgatggcggcctgcctgttc
gaccctgaatggcaccctggcgtgatcggcctggtcgcctccaagctcaaggaccgcctg
caccgtccggtgatcgcgctggcaccggccgagccgggcagcgaccagttgcgtggctcg
gcgcgctccattcccggcctgcatatccgcgacgtgctggcggcggtggatgcgcgccat
ccggggctgatccagaagttcggcgggcatgcgatggcggccggcctgagcctggagcac
cgcgcgttggccgcgttcgagcaggcgtttcagacccaggtgcaggcgatggtcgatgcc
tcgctgttgcaggccgaattgcacagcgatggcgagctggccgcgcacgaactcgatcat
ctgcatgccgaagcgctgcgtgccgccgggccgtgggggcagggctttcccgaaccgctg
ttcgatgggcaattcgaggtgctgcaatggcgcctgctcaaggagcgccacctcaagctg
accttgcgctgcgccgggcgcgccgggcgcgccgagccgctcaacgccatccacttcaat
ggctggcgcggcagcgagccggcgcgcacggtgcgcatcgcctatcgactggtcggcgac
gactaccgcggtggcactgcggtacagctcatcgtcgagcactgcgagccggcggcgtca
gcgggttga
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