Xanthomonas campestris pv. campestris 8004: XC_2880
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Entry
XC_2880 CDS
T00247
Name
(GenBank) DNA polymerase III alpha chain
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03030
DNA replication
xcb03430
Mismatch repair
xcb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XC_2880
03430 Mismatch repair
XC_2880
03440 Homologous recombination
XC_2880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xcb03032
]
XC_2880
03400 DNA repair and recombination proteins [BR:
xcb03400
]
XC_2880
Enzymes [BR:
xcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XC_2880
DNA replication proteins [BR:
xcb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XC_2880
DNA repair and recombination proteins [BR:
xcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XC_2880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AAY49928
UniProt:
A0A0H2XAZ6
LinkDB
All DBs
Position
3460720..3464310
Genome browser
AA seq
1196 aa
AA seq
DB search
MSTSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVMIATPDVTPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAIHPEWLQAGHANLFALAGRDSLAGRLFAEGRADLAEQQLADWQRVFGDGLHL
ELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEARVCISSGRVLDDP
KRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGTYFLPAYPVPEDET
LDSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIPNILGIT
LKDAMGEGKDTEMASPELIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVIAPEPLS
EFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINVRHARA
GIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGDYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVLPPRVNESAYMFEA
ASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCTRVGTAKLNRRTLEAMINA
GAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSAPAMRLDLPESKEWP
LGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKILASQQRGGGGGGDGEKRA
WRPEVSAILAGQVVGVRRKGDSQVFVQLEDGRGRVECSAFSDAMAEFGHLLTRDRILIIK
GGLREDEFNGGYSLRIRQCWDYEQICADHTQRLSLRLDLREKQAWSRIDTLLAKHRPGKT
PLRLDLLLRSPAGGVAGMLDLNGSHSVRIDQQLMDSLRADPAVRTLKVKYSPPWAQ
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttcccgcttcgtccatctgcacgtccacaccgagttctcgttggcggattcc
accatccgcgtgcccgagaaaccggatcaggctgacccgaaaaaagccaagcaggccaac
ctgctgagccgcgcggtcgaactcgacttgcccgcgctggcggtcaccgacctgaacaac
ctgttcgccctggtcaagttctacaaggccgccgaaggcgtgggcatcaagcccatcgcc
ggcgccgatgtcatgatcgccacgccggacgtgacgccctggcgcatgaccctgctgtgc
cgcgaccgcgagggctacctgagcctgtcgcgcctgctcacccgcgcctggatggagggc
caccgccccgaaggcggcgtggcgatccaccccgaatggctgcaggccgggcatgccaac
ctgtttgccctggccggccgcgacagcttggccgggcggctgttcgccgaaggccgcgcc
gacctggccgagcagcagctcgccgactggcagcgcgtgttcggcgacggcctgcacctg
gagctgacccgcaccggccgcgagggcgaggagcgtttcaaccagttcgcgctgcatgcg
gctggcgtgcgcggcctgccggtggtcgccagcaacgatgtgcgctttctgtatgccagc
gactttgcagcgcacgaagcgcgcgtgtgcatttcctccggccgcgtgctggacgacccc
aagcgcccgcgcgactacagcgaccagcaatacctcaagtccagcgaggaaatggccgcg
ctgttcgccgatgtgcccgacgccatcgacaacacgctggcgctggcgcagcgctgcaac
atcgaaatgcgcctgggcacttacttcctgcccgcctacccggtgccggaagacgaaacc
ctggacagctggattcgcagccagtcgcgcgacggtctggccgcgcgcctggaaaagaat
ccgatcgcgcccggcaagacccgccaggactacgttgaccggctcgaattcgagctggac
accatcatcaagatgggcttccccggctacttcctgatcgtggccgacttcatccagtgg
ggaaagaaccagggcatcccgatcggcccgggccgcggctccggcgctggctcgctggtg
gcgtgggcgctgcagatcaccgatctggacccgctgccgtacaacctgctgttcgagcgc
ttcttgaatccagagcgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaggtgatcgactacgtcgcgcgcaaatacggccgcgagcgggtcagccagatc
atcacctacggcaccatggccgccaaggcggtggtgcgcgacgccgggcgcgtgcttggc
ttcacttacggtctggtcgacagcgtggccaagctgattcccaacatcctgggcatcacg
ctcaaggacgcgatgggcgaaggcaaggacacggagatggcttcgccggagctgatccag
cgctatcaggtcgaggacgatgtccgcgacctgatggacctggcgcgccagctcgaagac
ctcacccgcaacgccggcaagcacgccggcggcgtggtgatcgcgcccgaaccgctgagt
gaattctgcccgctgttcgccgaacacgacgaaggcggccgcggcaagaatccggtcacc
cagttcgacaagaacgacgtggaagaagtcggcctggtgaagttcgacttcctgggcctg
cgcacgctgaccatcatcgattgggcggtgaaggcgatcaacgtgcgccacgcacgtgcc
ggcatcgacccggtcgacatcaccgccattccgctggacgatgcgcccacctacaagggc
gtgtttgcctcgggtaacaccggtgcggtgttccagttcgaatcctcgggcatgcgccgc
ctgctcaaggacgcgcgcccggaccgcttcgaagacctgatcgcgctggtgtcgctgtac
cggcccggcccgatggacctgatcccggacttcaacgcgcgtaagcacggccagcaggac
atcatctatcccgatccgcgcaccgaagcgatcctgaaagacacctacggcatcatggtg
tatcaggagcaggtgatgcagatggcgcagatcgtcggcgattattcgctgggcggcgcc
gacctgttgcgtcgtgcgatgggcaagaaggtgccggctgaaatggccaagcaccgcgaa
attttccgcgaaggcgcggccaagggcggcgtaagcgcgcagaaggccgatgaaatcttc
gacctgatggagaagttcgccggctacggcttcaacaagtcgcacgccgccgcctatgcg
ctggtcagttaccagaccgcctggctcaagcgtcactatccggccgaattcatggcggcc
acgttgtcctcggatatggacaacaccgacaaggtggtgggctttctcgatgaggtgcgc
aacctcggcctcaccgtgctgccgccgcgcgtcaatgagtcggcctacatgttcgaggcc
gccagccccgacaccatccagtacggcctgggcgcgatcaagggcgttggccagggcgcg
tgcgaggccatcgtcgaagagcgcctgcgcaacggcccctacaccacgctgctggatttc
tgcacacgcgtgggcaccgcaaagctcaatcgccgcacgctggaagcgatgatcaacgcc
ggtgcgatggacgggctgggcaagaaccgcgcgtcgttgatgctgcaattgccggaggtg
atgaaggccaccgagcagatggcacgcgaacgtgcctccggccagaactcgctgttcggc
gggcccgacccgagcgcgccggcgatgcgcctggacctgcccgaaagcaaggaatggccg
ctgggccaactgctcaccggcgagcgcgaaacactgggcttctacctcagcgggcatccg
ttcgatccgcatcgcgacgaagtgcgcgaactggtcggctgcgacctgagcgcgctcgac
aagatcctggcctcgcagcagcgcggcggcggcggcggtggcgacggtgaaaagcgcgcc
tggcgtcctgaagtcagcgccatcctggccggccaggtggtgggcgtgcgccgcaagggc
gacagccaggtgttcgtgcaactcgaagatggccgcggccgggtggaatgcagcgcgttc
tccgacgcgatggcagagttcggccacctgctcacccgtgaccgcatcctgatcatcaag
ggcggcctgcgcgaggatgagttcaacggcggctacagcctgcgcatccgccaatgctgg
gactacgagcagatctgcgccgaccacacgcagcggctgtcgttgcgcctggatctgcgc
gagaaacaggcctggtcccgtatcgacacgctgctggccaagcaccgccccggcaagacg
ccgctgcgcctggacctgctgctgcgctcgccggccggcggcgtggccggcatgctcgac
ctcaacggcagccactcggtgcgcatcgaccagcaactgatggacagcctgcgcgccgac
ccggccgtgcgcacgttgaaggtcaagtacagcccgccgtgggcgcagtga
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