Xanthomonas campestris pv. campestris 8004: XC_3346
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Entry
XC_3346 CDS
T00247
Name
(GenBank) RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XC_3346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcb03021
]
XC_3346
03400 DNA repair and recombination proteins [BR:
xcb03400
]
XC_3346
Enzymes [BR:
xcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XC_3346
Transcription machinery [BR:
xcb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XC_3346
DNA repair and recombination proteins [BR:
xcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XC_3346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AAY50390
UniProt:
Q4URD3
LinkDB
All DBs
Position
complement(3989990..3994207)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVDTVDGKRTSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKK
NISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEA
EVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSM
NSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLIMTPIVEGGDVVEPLKERV
LGRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARC
YGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSV
KFNNLKSVAHASGALVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQAVA
NWDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAQAKELRPIV
RIVDAKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGL
PRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVF
EGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQ
MLRKVEITDQGNSKFLNGEQVERQRVIEENARLVTRNELPAKYDPVLLGITKASLATESF
ISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSE
METLSGKPAVVEPVATVADAGADEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaatctcttcaatcagcagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcgtcgccggacctgattcgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccggaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atcttcggaccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcaccctggccaaggtgcgtcgcgag
cgcatgggtcacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaggccgtgtacgagctgctgcgcacgatcgacctgcagtcggaaatgacccgt
ctgcgcgaagaaatcgccagcaccggttcggaaaccaagctcaagcgtctcaccaagcgc
atcaaactgatcgaagccttcctggagtcgggtaaccgtccggagtggatggtcatgacc
gtgttgcccgtgctgccgccggacctgcgtccgctggtgccgctggatggtggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgc
cgcctgctggagctcaacgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtggatgcgctgctggacaacggccggcgcggtcgtgcgatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactactctggtcgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgcggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaggtgatccgcgagcatccg
gtgctgctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggcctgtactacatgagccgcgccctggagaacaag
aagggcgagggcatggtgtttgccaacaccagcgaagtgaagcgcgcctacgacaaccgc
gtggtggaactgcacgccaaggtcaaggtccgcatcacccaggtggacgtcgacaccgtt
gatggcaagcgcaccagcggcacctcgatcgtggataccacggtcggtcgtgcgctgctg
agcgaaatcctgcccgaaggcctgccgttccagctggccaacaccgagatgaccaagaag
aacatctcgcgtctgatcaactccagctaccgtctgctgggcttgaaggacacggtcgtg
ttcgccgacaagctgatgtacaccggctatgcctacgcaacccgcgcaggcgtgtcgatc
ggcatcgacgacatgctgattccggacgagaagaagggcatcctcaccgaggcagaagcc
gaagtgctggaaatccaggagcagtaccagtccggtctggtcaccgccggcgagcgctac
aacaaggtcgtggacatctggtcgcgtaccagcgagcgcatcgccaaggcgatgatggac
accatcggtaccgagaaggtcgaaaatgccaagggcgaaaccatcgaccagaagtcgatg
aactcgctctacatcatggccgactccggtgcgcgtggtagccaggcgcagatccgtcag
ctggccggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatc
aaggcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcc
cgtaagggtctggccgataccgcgttgaagacggcgaactcgggttacctgacccgtcgt
ctggtcgacgtggcgcaggacgtggtgatcaccgaagtcgattgcggcaccaccgagggg
ttgatcatgaccccgatcgtggaaggcggcgacgtggtggagccgttgaaggagcgcgtg
ctgggccgtgtcgtggccgaggacgtgtacctgccgggcaacgacgaagaaccgatcgtc
acccgcaacacgctgctcgacgaagcctgggttgccaagctggaagacgccagcgtgcag
tcggtgaaggtgcgttcgaccatcagctgcgaatcctcgttcggcgtgtgcgcacgctgc
tacggccgcgatctcgcacgtggtcaccaggtcaacatcggcgaagcggtcggcgtcatc
gccgcgcagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggt
ggtgcggcatcgcgtgcggctgcggtggacaacatcaccgtcaagaccaccggttcggtg
aagttcaacaacctcaagtcggtggcgcatgccagcggcgcactggttgcggtctcgcgt
tcgggcgaactgtccgtgctcgatggccatggccgtgagcgtgagcgctacaagctgccc
tacggtgccaccatcaccgccaaggatggtgatgcagtcaaggccggtcaggccgtggcc
aattgggatccgcataaccacccgatcgtgtcggaagtggccggtttcattcgcttcatc
gacttcgtcgacggcgtcaccgtcatcgagaagaccgacgaactgactggtctggcgtcg
cgcgaaatcaccgacccgaagcgtcgtggtgcccaggccaaggagctgcgcccgatcgtg
cgcatcgttgatgccaagggcaatgatctgaccattccgaacacggatctgccggcgcag
tacctgctgccgccgcgctcgatcgtcaacctgcaggacggcgccgccgtcggcgtgggc
gacgtggtggcgaagatcccgcaggaagcgtcgaagacccgcgacatcaccggtggtctg
ccgcgcgtggccgatctgttcgaagcacgcaagccgaaggatcctgcgatcctggccgag
cgctcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgtctgatcatcaag
gacaccgatggcagcgaacacgaagagctgatccccaagtaccgccagatcatcgtgttc
gaaggcgagcacgtgaccaagggcgagaccgtggtggacggcgagccgagcccgcaggac
atcctgcgtctgctgggtgtcgagccgctggccgcgtatctggtcaaggaaattcaggac
gtgtaccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcactcgccag
atgctgcgtaaggtcgagatcaccgatcagggcaacagcaagttcctcaacggcgagcag
gtcgagcgccagcgcgtcatcgaggaaaatgcacgcctggtcacgcgcaacgagctgccg
gccaagtacgacccggtgctgctgggtatcaccaaggcctcgctggccaccgagtcgttc
atctcggcggcgtcgttccaggagaccacacgcgtgttgaccgaggctgccgtccgcggc
acccgcgacaacctgcgcggtctgaaggaaaacgtcatcgtgggtcgtctgattccggcc
ggtaccggtctggcgtatcacgccggtcgccgcaaggcatcgggtctgaccgactcggaa
atggaaacgctgtccggcaagccggcagtggttgaaccggtcgcgaccgtggccgacgct
ggtgcggacgaggagtaa
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integrated database retrieval system
