Xanthomonas campestris pv. campestris 8004: XC_3850
Help
Entry
XC_3850 CDS
T00247
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XC_3850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcb03021
]
XC_3850
03019 Messenger RNA biogenesis [BR:
xcb03019
]
XC_3850
Transcription machinery [BR:
xcb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
XC_3850
Messenger RNA biogenesis [BR:
xcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XC_3850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
Spore_III_AA
OB_RNB
Mor
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
AAY50890
UniProt:
A0A0H2XDB3
LinkDB
All DBs
Position
4548071..4549351
Genome browser
AA seq
426 aa
AA seq
DB search
MPEGFPAYSLSDLKRMPAQKLLDIADQLNIQEGVARARKQDVIFALLKVLTRHGEGVAAD
GVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFA
LSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRILDLMAPQGKGQ
RALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRTVRGEVISSTF
DEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAN
ALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSEVHLNRRITEK
RVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKMKTTKSNDEF
FSSMKR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
gtgccggaaggcttcccggcgtactcgctgagcgacctcaagcggatgccggcgcagaag
ctgctggatatcgccgatcagctcaacatccaggaaggcgtggcccgcgcacgcaagcag
gatgtgatctttgcgctgctcaaggtgctcacccgccatggcgaaggcgttgccgccgac
ggcgtgctggagatcctgcccgacggtttcggcttcctgcgtgccgccgaggccagctat
ctggccggcccggacgatacgtatatctcgccgagccagatccgccgcttcaacctgcgc
accggcgaccatctgtccggccgcatccgcttccccaaggacggcgaacgctatttcgcg
ctgtcgatcgtggacaccattaatggtgagccgctggaagcgagcaagaacaaggtgctg
ttcgagaacctgaccccgctgttcccgcgtcggcgtttccgtctggaacgcggcgatggg
tccaccgaggacatcaccggccgcatcctcgatctgatggcaccgcagggtaaaggtcag
cgtgcgctgatcgtctccccgcccaaggccggtaagacgatgatgatgcagcaggtggcc
acggccatcaccaccaatcatcccgaagtgcacatgatcgtgctgctcatcgacgagcgc
ccggaagaagtgaccgaaatgcagcgcaccgtgcgcggcgaggtcatctcctccacgttc
gacgagccggccgcgcgccacgtgcaggttgccgagatggtgatcgaacgggccaagcgc
ctggtcgagcacaagaaggacgtggtgatcctgctggactccatcacccgtctggcacgc
gcctacaacaacgtggtgccgagctccggcaaggtgctcaccggtggtgtggatgccaac
gcgctgcatcgcccgaagcgcttcttcggtgcggcacgtaacgtggaagaaggcggttcg
ctgaccatcattgccacggcgctggtggaaaccggcagcaagatggacgaggtgatctac
gaagagttcaagggcaccggcaacagcgaagtgcatttgaaccgtcgcatcaccgaaaag
cgcgtgtacccggcgatcgacatcaaccgctcgggcacgcgtcgcgaagatctgttgatc
gagccggagctgctgcagaagatttggattctgcgcaagctgctgcatccgatggacgaa
atcgccgcgatggagttcctgctggacaagatgaagaccaccaagtccaacgacgagttc
ttcagctcaatgaagcgctga
DBGET
integrated database retrieval system
