Xanthomonas campestris pv. campestris 8004: XC_4109
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Entry
XC_4109 CDS
T00247
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03030
DNA replication
xcb03410
Base excision repair
xcb03420
Nucleotide excision repair
xcb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XC_4109
03410 Base excision repair
XC_4109
03420 Nucleotide excision repair
XC_4109
03440 Homologous recombination
XC_4109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xcb03032
]
XC_4109
03400 DNA repair and recombination proteins [BR:
xcb03400
]
XC_4109
Enzymes [BR:
xcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XC_4109
DNA replication proteins [BR:
xcb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XC_4109
DNA repair and recombination proteins [BR:
xcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
XC_4109
NER (nucleotide excision repair)
GGR (global genome repair) factors
XC_4109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Terminase_6
Motif
Other DBs
NCBI-ProteinID:
AAY51148
UniProt:
A0A0H2XC44
LinkDB
All DBs
Position
complement(4840113..4842896)
Genome browser
AA seq
927 aa
AA seq
DB search
MSRLVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKERPAYVAFVVDAPG
KTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGA
SDGLAVTISTGDKDFAQLVRPGVELVNTMSGSRMDSDEAVIAKFGVRPNQIVDLLALMGD
TVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGENLRAALPRLPLNRELVTI
KTDVVLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAEAGGLTAPMAVARTEP
GRARGTGFVSAPAAAPVELDPALSAPGQYETILTQAQLDSWIARLRAAGQFAFDTETDSL
DALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQALAQLAPLLTDPAVRKLGQHG
KYDLHVMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDICGKGA
KQIKFAQVSLEDATRYAAEDADITLRLHQVLGKRLAAEPALESVYRDIEMPLVGVLERIE
ANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVK
TPKGQPSTNEEALEAIADQHELPRVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQ
AGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDP
GLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGR
GEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAER
AAINAPMQGTAADIIKRAMVSVDGWIADHAQRALMILQVHDELVFEADADFVDTLLAEVT
ARMSAAASLRVPLVVDSGVGDNWDEAH
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgagcagattagtcctgatcgacgggtccagttacctgtatcgcgcgttccacgcgctt
ccgccgctgaccaatgcccagggcgagcccaccggtgcgttgttcggcgtggtcaacatg
ctgcgcgccaccttgaaggaacgcccggcctatgtggcgttcgtggtggatgcgcccggc
aagacatttcgtgatgacttgtatgccgactacaaggccaatcgcccgtcgatgcccgac
gacctgcgtgcacaggtgcagccgatgtgcgacatcgtgcatgcgctgggcatcgacatc
ctgcgcatcgacggtgtggaagcggacgatgtgatcggcacgctggcgctgcaaggcgcc
agcgacggcttggccgtcaccatctccaccggcgacaaggacttcgcgcagctggtgcgc
ccgggcgtggaactggtcaacaccatgagcggcagccgcatggattcggacgaggcggtg
atcgccaaattcggcgtgcgcccgaaccagatcgtcgacctgctggcgctgatgggcgac
accgtcgacaacgtgcccggcgtggaaaagtgcggccccaagaccgccgccaaatggctg
gccgaatacgactcgctcgacggcgtgatcgccaatgccgacaagatcaagggcaagatc
ggcgagaacctgcgcgccgccttgccgcggctgccgctcaatcgcgagctggtcaccatc
aagaccgacgtggtgctggccagcggtccgcgcgcgctggacctgcgcgaacccaacgcc
gaagcgctggcggtgctgtacgcgcgctacggcttcacccaggcgctgcgcgaactcggc
ggcgccgccgccgaggccggcgggctgaccgcaccgatggcggtggcgcgcaccgagcct
ggccgcgcacgcggcaccggcttcgtgtcggcgccggctgccgctccggtggagctggac
ccggcgctgtcggcgcccggccagtacgagaccatcctcacccaggcgcagctcgacagc
tggatcgcgcggctgcgcgcggccgggcagttcgccttcgataccgaaaccgacagcctg
gacgcgctgcaggccaacctgatcggcctcagcgtcgccgccgagcccggccaggccgcc
tacctgccgttcggccacgatttccccggcgcaccggcccagctcgaccgcacgcaggcg
ctggcgcagctggcgccgctgctgaccgacccggcggtgcgcaagctcggccagcacggc
aagtacgacctgcacgtgatgcgccgccacggcatcgccctggccggctacgccgacgac
accctgctggagagcttcgtgctcaactccggcagtgcccgccacgacatggacagcctg
gccaagcgttacctgggctacgacaccgtcaagtacgaagacatctgcggcaagggcgcc
aagcagatcaagttcgcccaggtcagcctggaagacgccacccgctacgccgccgaagac
gccgacatcaccctgcgcctgcaccaggtgctgggcaagcgcctggccgccgagccggcg
ctggagagtgtctaccgcgacatcgaaatgccgctggtgggcgtgctggagcgcatcgag
gccaacggcgtgtgcgtggacgcagccgagctgcgccgccagagcgcggacctgtccaag
cgcatgctcgccgcccagcagaaggccaccgaactggccgggcgcaccttcaacctggac
tcgcccaaacagctgcaggcgctgctgttcgacgagctcaagctgcccgccgtggtcaag
acgcccaagggccagccctcgaccaacgaagaagccctggaagccatcgccgaccagcac
gagctgccgcgggtgatcctggactaccgcagcctggccaaactgcgcagcacctacacc
gacaagctgccggagatgatccacccgcagtccgggcgcgtgcacaccagctaccaccag
gccggcgcggccaccgggcggttgtcttcgtccgaccccaacctgcagaacatcccgatc
cgcaccgaagacggccgccgcatccgccgcgcctttgtcgccccggccggacgcaagctg
atcgcctgcgactactcgcagatcgagctgcgcatcatggcccacctgtccggcgacccc
ggcctggtcggcgcattcgaatccggcgccgacgtgcaccgtgccaccgccgccgaagtg
ttcggccgcaccatcgatacggtcagcggggatgagcgccgcgccgccaaggcgatcaac
ttcggcctgatgtacggcatgagtgcgttcggcctggcccgccagctcggcatcggccgt
ggcgaggcgcaggactacatcgcgctgtacttcagccgttacccgggcgtgcgtgacttc
atggaaaccacccggcagcaggcccgcgacaagggctacgtggaaaccgtgttcggccgc
cggctgtatctggacttcatcaacgccggcagccagggccaacgcgccggcgccgagcgc
gcggccatcaacgcgccgatgcagggcaccgccgccgacatcatcaagcgcgccatggtc
agcgtggatggctggattgccgatcacgcgcagcgcgccctgatgatcctgcaggtgcac
gacgaactggtgttcgaggccgacgccgacttcgtcgacacgctgctggccgaggtcacc
gcgcgcatgtctgcggccgccagcctgcgcgtgccgctggtggtcgattcgggcgtgggc
gataactgggacgaggcgcattga
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