Xanthomonas campestris pv. campestris 8004: XC_4115
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Entry
XC_4115 CDS
T00247
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03420
Nucleotide excision repair
xcb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XC_4115
03430 Mismatch repair
XC_4115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcb03400
]
XC_4115
Enzymes [BR:
xcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XC_4115
DNA repair and recombination proteins [BR:
xcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XC_4115
MMR (mismatch excision repair)
Other MMR factors
XC_4115
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
DUF6825
InPase
Motif
Other DBs
NCBI-ProteinID:
AAY51154
LinkDB
All DBs
Position
complement(4846747..4848933)
Genome browser
AA seq
728 aa
AA seq
DB search
MDVSHLLDHLNPAQREAVSAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAV
TFTNKAAGEMRHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQL
RLVKRVVQSLELDETKYPPKQMGWWINEQKDEGRRPQHIQPEPNDDWTEVRRQVYAAYQE
RCDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILVDEFQDTNAIQYAFVRVLAGE
SGHVFVVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTVRLEQNYRSSANILGAANAVIAH
NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQ
SRALEEALIAEQLPYRVYGGMRFFERAEIKDALAYLRMLTNRSDDAAFERAVNTPTRGIG
DRTLDEVRRLARANALSLWEAAMLCTQENTLAARARNALATFLSLVGQLQAETGEMDLAE
RIDHVLMRSGLREHWAKESRGGLDSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFL
AYASLEAGEGQAQAGEEGVQLMTLHSAKGLEFPIVFLVGLEDGLFPSARSLEESGRLEEE
RRLAYVGITRARQKLVLCYAESRRIHGQDNYNVPSRFLREIPRDLLHEVRPKVQVSRTAS
LGAARGGPVHAVVDAAPIKLGANVEHPKFGGGVVVDYEGAGAHARVQVQFDEVGAKWLVM
AYANLTVV
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtggatgtctctcatttgctcgatcatttaaaccccgcccagcgcgaggccgtttccgcg
ccgccggggcattaccttgtgctggccggcgccggctccggcaagacgcgcgtgctgatc
catcgcattgcctggctcaatgaagtccagggcgtgccaaaccacggcatcttcgcggtg
accttcaccaacaaggccgccggcgaaatgcgccaccgcaccgacctgcaactgcgcaac
ggcagccgcgggatgtggatcggcaccttccatgggctggcccatcgcctgctgcgcctg
cactggcaggacgcgcggctgccggaaggcttccaggttatggacagcgacgaccagcta
cggctggtcaagcgcgtggtgcagtcgctggagctggacgagaccaagtatccgcccaag
cagatgggctggtggatcaacgagcagaaggacgaaggccgccgcccgcaacacatccag
cccgagcccaacgacgactggaccgaggtgcgccggcaggtgtacgccgcctaccaggaa
cgctgcgaccgctccgggctgctggatttcgccgagctgctgctgcgcgcgcacgaatta
ctgcgcgacaccccggccttgctggcgcattaccgcgcgcgcttccgcgaaattctggtc
gacgagttccaggacaccaacgccatccagtacgccttcgtgcgcgtgcttgccggcgag
agcggccacgtattcgtggtgggcgacgacgaccaggccatctacggctggcgcggtgcc
aaggtcgagaacgtgcagcgcttcctcaaggatttccccggtgcgcagacggtgcggctg
gagcagaactaccggtccagcgccaatattctgggcgcggccaatgcggtgatcgcgcat
aaccccgaccgcatcggcaagcagttgtggaccgattccggcgatggcgacccgatcgat
ctgtacgcggcctacaacgaagtcgacgaggcccgctatgtagtcgagcgcgcgcgccag
tgggtgcgcgatggcggcagctatggcgaagtggcggtgctctatcgcagcaatgcgcaa
tcgcgcgcgctggaagaagcactgattgccgaacaactgccgtaccgcgtgtatggcggc
atgcgctttttcgaacgcgccgaaatcaaggacgcgctggcgtacctgcgcatgctcacc
aaccgcagcgacgatgcggcgttcgagcgcgcggtcaacacgcccacgcgtggcattggc
gatcgcaccctggatgaagtgcgccggctggcacgcgccaatgcgctgtcgctgtgggaa
gcggcaatgctgtgcacgcaggaaaatactcttgcggcgcgtgcacgcaatgcgctggct
acgttcctgagcctggtcggccagctgcaggccgaaaccggcgagatggacctggccgag
cgcatcgaccatgtgctgatgcgctcgggcctgcgcgagcattgggccaaggaaagccgc
ggcgggctggattcggaatcgcgcaccgagaacctggacgaactggtctcggtggcctcg
cgcttcacccgcccggacgatgaagacagccagggcatgaccgaactggtggccttcctc
gcctacgcctcgctggaagccggcgaaggccaggcgcaggccggcgaagaaggcgtgcag
ctgatgacgttgcactcggccaagggcctggaatttccgatcgtgttcctggtcgggctg
gaagacggcctgttccccagcgcacgctcgctggaagaaagcggccggctcgaagaagaa
cgccgcctggcctacgtgggtatcacccgcgcgcgccagaagctggtgctgtgctacgcc
gaatcgcggcgcatccacggccaggacaactacaacgtgccgtcgcgctttctgcgcgag
atcccgcgcgacctgctgcatgaagtgcggcccaaggtgcaggtctcgcgcaccgcctcg
ctgggcgccgcacgcggcggcccggtacatgccgtggtggacgccgcgccgatcaagctc
ggcgccaatgtcgaacaccccaagttcggtggcggcgtggttgtcgactacgaaggcgcc
ggcgcgcatgcacgcgtgcaggtgcaattcgatgaagtgggcgccaagtggctggtgatg
gcgtacgcgaatctgacggtggtgtag
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