Xanthomonas campestris pv. campestris 8004: XC_4288
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Entry
XC_4288 CDS
T00247
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XC_4288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcb03400
]
XC_4288
Enzymes [BR:
xcb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XC_4288
DNA repair and recombination proteins [BR:
xcb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XC_4288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AAY51323
UniProt:
A0A0H2XCV7
LinkDB
All DBs
Position
complement(5081732..5085850)
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AA seq
1372 aa
AA seq
DB search
MSNSPVTDPYLHLPLHGVRLIEASAGTGKTFTLATLFTRLVVERQLRIGQILAVTFTEAA
TQELRRRIRERLALAATLVPDARAGAAATEAQTTLLPDASSAGVGAALAATEPTQTQASD
APSSAINMVLPATAPSDHLSHPPAQTPPQPHAPAAPDAVLTRAILTAHLATGTETPSALR
RRLQQAVEEIDLAAIFTIHGFCARVLREHALESGQAFAAPQLLANDRELLGEVAADLWRQ
RAADAAMADDLVALWPAGPTALASDLRALVQQPELLPAVAAPTPDPQPARQAAAQAVVAA
LRAHGDTAYDAVAAAFEHKIFDGRRARRPSFDKAFEQLWQGSAEAHWVLDDGGHLDKLLP
QRLREFCKDGAHDRVPCSPLFDALAVWQQADAVVRQWEGQRRIRLLHALRDDAVLQLAQR
KRQRRVQTYDDLVDGVARALQGPQAEALVQRLRAQYAIALVDEFQDTDDRQWQIFSRVFG
PEHAASGEAFAPDDDADFDNAAGTPPPRLLALIGDPKQAIYGFRGGDVQTYLAAATTAQR
APPLEHNFRSRPGVLAAIDALYAQAGYAEAFLTEGIAFHPVQPGTKRSDADLQRDDAAAP
ALTLWRAPAPPPPAKGKPKPWSAGRARELCTAACVAAIRGWLAGGRDGSASINGRPVQAG
DIAVLVRSHGEATRIQQALGAVGIPAVAAGKQSLFATDEALELLALLQALLDPGDDSRLR
AALATVLIGEDAAAIAALEHDGERHRRWQQQALDWRERWQRGGPLALVGDLGATHGQRLL
ALVDGERRLTNYLQLAELLQEADTRALGPHGLVDWLARRIANADDNDETQQLRLESDARR
VQIVTLHKSKGLEYPLVFLPYIGIGRADKSPGRHCVVHAPPHGRQLHWNTSKWSADDTAS
WSTAETAWKHEQRAEDARLLYVGLTRAEHALWIATGAFHQHERTALAPMLRDPAALQASA
GAGVIALDDTAPPATLPRLPADDAVQVPAARLAQRHVVPDWWVYSFTQLANADAGSDPMA
SATLASSGGSDEPPASEPVSAPAEVEAFDPRFAGNRFGVAMHDVFERCDFAAWRNWCPGQ
PAPEGQAAAILEALQRGGYAQDELDDGLAMLTRLVGHTLTVTLPEGTCLAAVPEPQRRNE
MEFHFAMRPTRVDALLALLHRFGVVTERQAFGARQRLEGLMTGLIDLTYCADGRWYVLDY
KSNRLPAYDPDALARAMAHSEYELQALIYTIALHRWLRFRLGASYDYARDFGGVRYLFCR
GLDAARNPAADSSSILGSGSGSGSDSDSDSVNGASSVSGSDPASDAMSDTPAPNTPVPGI
YAWRFDPALVQALDALFAGNPTEPLSSDALKPLSPRERGWGEGTSTTGTPTP
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacagccccgtgaccgacccatatctgcacctgccgctacacggcgtgcgcctg
atcgaggccagcgccggcaccggcaagaccttcaccctggccacgttgtttacgcggctg
gtggtggagcggcagctgcgcatcggccagatcctggcggtgacctttaccgaagccgcc
acccaggagctgcgccgccgcatccgcgagcgcctggccctggccgccaccctggtcccc
gacgcccgcgcaggcgcggccgcaaccgaagcgcagacaacgctgctgcccgacgcctca
tcggctggtgtaggagcggccttggccgcgaccgaacccacccagacgcaggcgagcgat
gcgccatcgtctgcgatcaacatggtcctgcccgcgaccgcacctagcgatcacctgtcg
cacccgccagcgcagacacccccgcaaccacacgccccggccgcacccgacgccgtcctc
acccgcgccatcctcaccgcacacctggccaccggcacggagactccctccgcgctacgc
cgccgcttgcagcaggcggtggaagaaatcgacctggcggccatcttcaccatccacggc
ttttgcgcgcgcgtgctgcgcgaacacgcgctggaaagcggccaggcctttgccgcgccg
caactgctggccaacgaccgcgaactgctcggcgaggtggccgccgacctgtggcggcag
cgcgccgccgatgccgccatggccgacgatctggtggcgctgtggccggccggccccacc
gccctggccagcgacctgcgcgcgctggtgcagcagcccgaattgctgcccgctgtcgcc
gcaccaacgccggacccgcagcccgcgcgccaggccgccgcgcaggccgtggtggccgcg
ttgcgtgcgcatggcgataccgcctacgacgcggtggccgccgcgttcgagcacaagatc
ttcgatggccgccgcgcgcgccgccccagtttcgacaaggccttcgagcaactgtggcag
ggcagtgccgaggcgcattgggtgctggacgacggcggccatctggacaaattgctgccg
cagcgcctgcgcgaattctgcaaggacggcgcgcacgaccgcgtgccgtgctcgccgctg
ttcgacgcgctcgccgtgtggcaacaggccgatgcagtggtgcgccagtgggaagggcag
cgccgcatccgcctgctgcatgcgctgcgcgacgatgccgtgctgcagctggcgcagcgc
aagcgccagcgccgcgtgcaaacctacgacgacctggtcgatggcgtcgctcgcgcattg
cagggcccgcaggccgaagcgctggtgcagcggctgcgcgcgcaatacgccattgcgctg
gtggacgaattccaggacaccgacgaccgccagtggcagatcttctcgcgcgtgttcggg
cctgagcacgctgcctccggcgaggcattcgcgccggacgatgatgcggatttcgacaac
gctgccggcaccccgccgccgcgcctgctcgccttgatcggcgaccccaagcaggccatc
tacggcttccgcggtggcgacgtgcagacctatctggctgcggccaccaccgcacaacgc
gcgccgccgctggagcacaacttccgctcgcgccccggcgtgctggcggccatcgacgcg
ctgtacgcgcaggctggctatgccgaggccttcctcaccgagggcatcgcgtttcatccg
gtgcagccgggtaccaaacgcagcgacgccgatctgcagcgcgatgacgccgcggccccg
gcactgacgctgtggcgcgcgcctgcgccgccaccgcccgcgaaaggcaaacccaaaccc
tggagcgccggccgcgcgcgcgagctgtgcaccgctgcctgcgtggcggccatccgcggt
tggctggccggtggccgcgacggcagcgccagcatcaacggccgcccggtgcaggccggc
gacatcgcggtgctggtgcgtagtcatggcgaggccacgcgcatccagcaagcgctgggc
gcggtgggcattcctgcggtggcggccggcaagcagagcctgttcgccaccgacgaagca
ctggaactgctcgccttgctgcaggccttgctcgacccgggcgacgacagccgcctgcgt
gccgcgctggccaccgtgctgatcggcgaagacgccgccgccattgccgccctcgaacac
gacggcgagcgtcatcgccgctggcagcagcaggcgctggactggcgcgaacgctggcag
cgcggcggcccgttggccctggtcggcgatctgggggccacgcatgggcaacgcctgctg
gccctggtcgatggcgaacgccgtctcaccaactacctgcaactggccgagctgctgcag
gaagccgacacccgcgcgctcggcccgcacggcctggtcgactggctggcacgccgcatc
gccaatgccgacgacaatgacgagacccagcagctgcggctggaatcggacgcgcgccgc
gtgcagatcgtcaccctgcacaagagcaagggcctggaataccccctggtgttcctgccg
tacatcggcattggccgtgccgataaaagcccgggccgccattgcgtggtgcacgcgcca
ccgcatggccgccagctgcactggaacacctccaaatggagcgccgacgacaccgccagc
tggagcaccgccgagacggcgtggaagcacgaacagcgcgccgaagacgcgcgcctgctc
tacgtcggcctgacccgcgccgagcacgcgctgtggatcgccaccggtgctttccaccag
cacgagcgcaccgcgctggcgccgatgctgcgcgacccggccgcactgcaggccagcgcc
ggtgcaggggtgatcgccctcgacgacaccgcgccgccggccacgctgccgcgcctgccc
gccgacgacgcggtgcaggtgcccgccgcgcggctggcgcagcgccacgtggtgccggac
tggtgggtctacagcttcacccagctggccaatgccgacgccggcagcgacccgatggcc
agcgccacgctcgccagcagtggcggcagcgacgaaccgccggccagcgagccggtgagc
gcgcccgccgaggtggaggcgttcgacccccgctttgctggcaaccgcttcggcgtggcc
atgcacgatgtgttcgaacgctgcgacttcgccgcctggcgcaactggtgccccggccag
cccgcgcccgagggccaggccgccgccattctcgaagcgctgcaacgcggcggctacgcc
caggacgaactggacgacggcctggccatgctcacccgcctggtcggccacaccctcacc
gtgaccctgcccgagggcacctgcctggccgcggtgcccgagccgcagcgccgcaacgag
atggaattccacttcgccatgcggcccacccgcgtggacgccctgctggcgctgctgcac
cgctttggcgtggtcaccgagcgccaggccttcggcgcgcgccaacgcctggaaggcctg
atgaccggcctgatcgacctcacctactgcgcggacgggcgctggtacgtgctcgactac
aaatccaaccgcctgccggcctacgaccccgacgccctggcgcgggccatggcgcacagc
gagtacgaactgcaggcgctgatctacaccatcgccttgcaccgttggctgcgcttccgc
ctgggtgccagctacgactacgcccgcgacttcggcggcgtgcgctacctgttctgccgc
ggcctggacgcggcccgtaaccccgccgccgactccagctccatcctcggttccggttcc
ggttccggttccgactccgactccgactccgtcaacggcgccagctccgtctccggttcc
gaccccgccagcgacgccatgtccgatacgcctgcacccaatacgcctgtgcctggcatt
tacgcctggcgcttcgatccggcgctggtccaagccctggacgccctgttcgccggcaat
cccaccgagcctctttccagtgacgccttaaagcccctctcccctcgggagaggggttgg
ggtgagggtacgtccaccacgggaacgcccaccccatga
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