Xanthomonas campestris pv. campestris ATCC 33913: XCC0590
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Entry
XCC0590 CDS
T00083
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCC0590 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcc03019
]
XCC0590 (rhlE)
Enzymes [BR:
xcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XCC0590 (rhlE)
Messenger RNA biogenesis [BR:
xcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XCC0590 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
AAM39906
UniProt:
Q8PCW1
LinkDB
All DBs
Position
complement(710483..711871)
Genome browser
AA seq
462 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRSSGPRQATAGAGAGRRDGGRGGSGRPASRGA
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccttgggcctggcgcccttcctgctgcgcgcattggccgagcagggc
tatgaaacccccaccgccatccagcagcaggcgatcccgctcgtgctggccggccatgac
ctgctggctggcgcacagaccggtaccggcaagaccgccgcgttcggcctgccgctgctg
cagcacctgggcaccaccccgcagccggtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgagctggccacccaggtgcacgacagcctgcgcggctacagcaag
tacctgcgcattccgagcgcggtgatctacggcggcgtgggcatgggcaaccagctcgat
gcgctgcgtcgtggcgtggacctgctgatcgcctgcccgggccggctgatcgaccatatc
gagcgccgcagcgtggacctgtccggcatcgaagtactgatcctggacgaagccgaccgc
atgctcgacatgggcttcttgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgccagaccctgctgttctcggccacgttcgaagagaacatcaagcagctggcgctg
gaattcatgcgcaacccgatgcagatccaggtcaccccgagcaacaccgtggccgagagc
atcacccaccgcgtgcacccggtcgatggcgcgcgcaagcgcgacctgctgctgcacctg
ctggcgcaggacagccgcgagcagaccctggtcttcgcacgcaccaagcacggcagcgac
aagctggcgctgttcctggagaagtccggcatcaagaccgcggcgatccacggcaacaag
agccagggccagcgtatgcgtgcactgagcgacttcaaggccggccgcgtgaccgtgctg
gtggccaccgacatcgccgcgcgtggtatcgatatcgaccagttgccgaaggtcatcaac
tatgacctgccgatggtggccgaggactacgtgcaccgcatcggccggactggccgtaac
ggttcgaccggcgaggcgatctcgttggtggcacaggacgaagccaagctgctgcgtcag
atcgtgcgcatgctgggccgcgacgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgctggggcaacagcgccccgggccgtgccgagcagccaggtggcgatcgc
gccccgcgcaagagccacgcccgtcgcccgcacggtgacgcaccgcgccaggcacatgcg
catgccggcccgaagaagccgggtggccagcgcagcagcgggccgcgtcaggccactgcc
ggcgccggtgccggccgtcgcgacggtggtcgtggtggcagtggccggcccgccagccgc
ggcgcctaa
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