Xanthomonas campestris pv. campestris ATCC 33913: XCC0644
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Entry
XCC0644 CDS
T00083
Symbol
pel
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc00040
Pentose and glucuronate interconversions
xcc01100
Metabolic pathways
xcc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
XCC0644 (pel)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
XCC0644 (pel)
Enzymes [BR:
xcc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
XCC0644 (pel)
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
AAM39960
UniProt:
Q8PCR9
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All DBs
Position
768644..769777
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AA seq
377 aa
AA seq
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MKPKFSTAAAASLFVGSLLVIGVASADPALEVATTGWATQNGGTKGGSKAAAANIYTVKN
AAELKAALKASVGSNGRIIKISGVIDVSEGKAYSTTADMKSRARLDIPTKTTLIGITSNA
EIREGYMYVKANDVIIRNITIENPWDPQPVWDPDDGSAGNWNSEYDGLTVEGASNVWVDH
VTFTDGRRTDDQNGTANGRPKQHHDGAMDVKKGANYVTISYSVFKLHEKNDLIGSSDSAS
STDSGKLKVTIHNTMFQDIAARAPRVRFGQVHLYNNYHVGSTSNKVYPFSHAHGVGKESK
IFSERNAFEISGVSSCDKIAADYGGSVYRDQGSLLNGKALSCSWNTNIGWTPPYTYNLLS
ADKVAADVKAKAGAGKL
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgaaattctcaacggcggccgccgcgtcgctgtttgtcgggtcgttgctggtg
attggcgttgccagcgccgatcctgcactggaagttgccacgacaggctgggccacgcag
aacggtggcaccaagggcggctccaaagccgcggccgccaatatctacacggtcaagaac
gctgccgagctgaaagctgcgttgaaagccagtgttggcagcaacggacgcatcatcaag
atcagcggcgtgatcgacgtcagcgaaggcaaggcctacagcaccacggccgacatgaag
agccgcgcgcgtctggacattcccaccaagaccaccttgatcggcatcaccagcaacgcg
gaaatccgcgaaggctacatgtacgtcaaggcgaacgacgtcatcatccgcaacatcacc
atcgaaaatccgtgggatccgcagccggtctgggatccggacgatggcagcgcgggcaac
tggaactccgaatacgacgggttgaccgtggaaggcgccagcaacgtgtgggtggaccac
gtgaccttcaccgatggccgccgtaccgatgatcagaacggcaccgccaacggccgcccg
aagcaacaccacgatggcgcgatggacgtcaagaaaggcgccaactacgtgaccatttcg
tactcggtgttcaagctgcacgagaagaacgatttgatcggctccagcgacagcgcctcc
agcaccgacagcggcaagctcaaggtcaccatccacaacaccatgttccaggacatcgcc
gcacgtgcgccgcgtgtgcgcttcggtcaggtgcacctgtacaacaactaccacgtcggc
agcaccagcaataaggtgtatccgttctcgcatgcgcatggtgtcggcaaggaatcgaag
attttttccgagcgcaacgcattcgagatcagtggcgtgagcagctgcgacaagatcgct
gccgactacggcggcagcgtgtaccgcgatcagggctcgttgctcaacggcaaggcgctt
tcttgctcgtggaataccaacatcggctggacgccgccgtatacctacaacctgctgtcg
gccgacaaggtcgccgccgacgtcaaggcaaaagcaggtgccggaaagctgtaa
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